RNA–Protein interactions for RNA: YLL011W

SOF1, Transcript of Protein required for biogenesis of 40S (small) ribosomal subunit, yeast

Gene SOF1, Length 1,470 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SOF1	YLL011W	BNR1	P40450	1375 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	TUB3	P09734	445 aa	Known RBP	4.61	□□□□□ -1.67
SOF1	YLL011W	SEC12	P11655	471 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	CHS2	P14180	963 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	STE14	P32584	239 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	UBP11	P36026	717 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	TDP1	P38319	544 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	YBR259W	P38338	688 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	MPT5	P39016	859 aa	Known RBP RIP-Chip data	4.61	□□□□□ -1.67	not detected
SOF1	YLL011W	ARB1	P40024	610 aa	Known RBP	4.61	□□□□□ -1.67
SOF1	YLL011W	THI6	P41835	540 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	ASE1	P50275	885 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	OCA1	P50946	238 aa	Predicted RBP	4.61	□□□□□ -1.67
SOF1	YLL011W	BUD9	P53226	547 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	JJJ1	P53863	590 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	RSF1	Q05043	376 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	THI22	Q06490	572 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	SWM1	Q12379	170 aa		4.61	□□□□□ -1.67
SOF1	YLL011W	ERG27	Q12452	347 aa	Known RBP	4.61	□□□□□ -1.67
SOF1	YLL011W	PNO1	Q99216	274 aa	Known RBP	4.61	□□□□□ -1.67
SOF1	YLL011W	MDH1	P17505	334 aa	Known RBP RIP-Chip data	4.6	□□□□□ -1.67	not detected
SOF1	YLL011W	SEC15	P22224	910 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	SWC3	P31376	625 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	SMI1	P32566	505 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	LAS1	P36146	502 aa	Predicted RBP	4.6	□□□□□ -1.67
SOF1	YLL011W	MAL33	P38157	468 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	TOS1	P38288	455 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	TIF4631	P39935	952 aa	Known RBP	4.6	□□□□□ -1.67
SOF1	YLL011W	GET2	P40056	285 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	SKP2	P42843	763 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	FYV8	P46949	817 aa	Known RBP	4.6	□□□□□ -1.67
SOF1	YLL011W	INN1	P53901	409 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	CLU1	Q03690	1277 aa	Known RBP	4.6	□□□□□ -1.67
SOF1	YLL011W	YDR444W	Q04093	687 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	HOF1	Q05080	669 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	FMP45	Q07651	309 aa		4.6	□□□□□ -1.67
SOF1	YLL011W	HRP1	Q99383	534 aa	Known RBP	4.6	□□□□□ -1.67
SOF1	YLL011W	CET1	O13297	549 aa	Predicted RBP	4.59	□□□□□ -1.67
SOF1	YLL011W	SOD2	P00447	233 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	TUF1	P02992	437 aa	Known RBP	4.59	□□□□□ -1.67
SOF1	YLL011W	GAL10	P04397	699 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	YCR051W	P25631	222 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	POT1	P27796	417 aa	Known RBP RIP-Chip data	4.59	□□□□□ -1.67	not detected
SOF1	YLL011W	PRP45	P28004	379 aa	Predicted RBP	4.59	□□□□□ -1.67
SOF1	YLL011W	PGM1	P33401	570 aa	Known RBP	4.59	□□□□□ -1.67
SOF1	YLL011W	ACO2	P39533	789 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	ECM1	P39715	212 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	SLZ1	P40167	298 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	EFM4	P40516	257 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	MET28	P40573	187 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	ROK1	P45818	564 aa	Predicted RBP	4.59	□□□□□ -1.67
SOF1	YLL011W	JJJ3	P47138	172 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	COS12	P53053	380 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	TPO1	Q07824	586 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	GPM3	Q12326	303 aa		4.59	□□□□□ -1.67
SOF1	YLL011W	AI3	P03877	415 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	URA7	P28274	579 aa	Known RBP	4.58	□□□□□ -1.68
SOF1	YLL011W	MET22	P32179	357 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	YIL161W	P40449	235 aa	Known RBP	4.58	□□□□□ -1.68
SOF1	YLL011W	URM1	P40554	99 aa	Predicted RBP	4.58	□□□□□ -1.68
SOF1	YLL011W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SOF1	YLL011W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SOF1	YLL011W	IDS2	P46958	469 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	LYS4	P49367	693 aa	Predicted RBP	4.58	□□□□□ -1.68
SOF1	YLL011W	CUL3	P53202	744 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	GTF1	P53260	183 aa	Predicted RBP	4.58	□□□□□ -1.68
SOF1	YLL011W	EOS1	P53938	366 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	YPL062W	Q02781	134 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	MUB1	Q03162	620 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	YML037C	Q03703	340 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	SSY1	Q03770	852 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	GAD1	Q04792	585 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	YLL032C	Q07834	825 aa	Known RBP RIP-Chip data	4.58	□□□□□ -1.68	not detected
SOF1	YLL011W	SPE4	Q12455	300 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	YOR019W	Q99248	730 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	CAT8	P39113	1433 aa		4.58	□□□□□ -1.68
SOF1	YLL011W	CYC1	P00044	109 aa	Predicted RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	RPC40	P07703	335 aa	Known RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	SUI2	P20459	304 aa	Known RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	REC107	P21651	314 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	ERV1	P27882	189 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	DCG1	P32460	244 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	AUR1	P36107	401 aa	Predicted RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	VID24	P38263	362 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	GND1	P38720	489 aa	Known RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	YIL077C	P40508	320 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	TCB2	P48231	1178 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	GCV2	P49095	1034 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	YNR014W	P53719	212 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	TEX1	P53851	422 aa	Known RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	NRG1	Q03125	231 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	DIA2	Q08496	732 aa	Predicted RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	BUD7	Q08754	746 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	TCO89	Q08921	799 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	SPE3	Q12074	293 aa	Known RBP	4.57	□□□□□ -1.68
SOF1	YLL011W	YJR112W-A	Q3E743	109 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	AFI1	Q99222	893 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	ISN1	Q99312	450 aa		4.57	□□□□□ -1.68
SOF1	YLL011W	VPS33	P20795	691 aa		4.56	□□□□□ -1.68
SOF1	YLL011W	PAP1	P29468	568 aa	Known RBP	4.56	□□□□□ -1.68

Retrieved 100 of 5,963 RNA–protein pairs in 20.2 ms