RNA–Protein interactions for RNA: YFR004W

RPN11, Transcript of Metalloprotease subunit of 19S regulatory particle, yeastyeast

Gene RPN11, Length 921 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
RPN11YFR004W NDJ1Q12366 352 aa6.16□□□□□ -1.42
RPN11YFR004W EMP46Q12396 444 aa6.16□□□□□ -1.42
RPN11YFR004W TEF1P02994 458 aaKnown RBP6.15□□□□□ -1.42
RPN11YFR004W RAD3P06839 778 aa6.15□□□□□ -1.42
RPN11YFR004W EST1P17214 699 aaPredicted RBP6.15□□□□□ -1.42
RPN11YFR004W FPR1P20081 114 aaKnown RBP6.15□□□□□ -1.42
RPN11YFR004W SLY1P22213 666 aa6.15□□□□□ -1.42
RPN11YFR004W SEC1P30619 724 aaKnown RBP6.15□□□□□ -1.42
RPN11YFR004W MLS1P30952 554 aa6.15□□□□□ -1.42
RPN11YFR004W RAD5P32849 1169 aaPredicted RBP6.15□□□□□ -1.42
RPN11YFR004W STE13P33894 931 aa6.15□□□□□ -1.42
RPN11YFR004W AGP2P38090 596 aa6.15□□□□□ -1.42
RPN11YFR004W LIN1P38852 340 aaPredicted RBP6.15□□□□□ -1.42
RPN11YFR004W NUP60P39705 539 aa6.15□□□□□ -1.42
RPN11YFR004W ARG2P40360 574 aa6.15□□□□□ -1.42
RPN11YFR004W UBP6P43593 499 aaKnown RBP6.15□□□□□ -1.42
RPN11YFR004W YJR115WP47152 169 aa6.15□□□□□ -1.42
RPN11YFR004W ILM1P47155 203 aa6.15□□□□□ -1.42
RPN11YFR004W HOP2P53187 214 aa6.15□□□□□ -1.42
RPN11YFR004W NNF2P53253 936 aa6.15□□□□□ -1.42
RPN11YFR004W CEG1Q01159 459 aaPredicted RBP6.15□□□□□ -1.42
RPN11YFR004W ELP3Q02908 557 aaKnown RBP6.15□□□□□ -1.42
RPN11YFR004W KAP95Q06142 861 aaKnown RBP6.15□□□□□ -1.42
RPN11YFR004W TRE1Q08919 783 aa6.15□□□□□ -1.42
RPN11YFR004W YLR053CQ12026 108 aa6.15□□□□□ -1.42
RPN11YFR004W Q0182Q9ZZW1 134 aa6.15□□□□□ -1.42
RPN11YFR004W GCN1P33892 2672 aaKnown RBP6.14□□□□□ -1.43
RPN11YFR004W RPP2BP02400 110 aaKnown RBP6.14□□□□□ -1.43
RPN11YFR004W SSC1P0CS90 654 aaKnown RBP6.14□□□□□ -1.43
RPN11YFR004W REV1P12689 985 aa6.14□□□□□ -1.43
RPN11YFR004W PWP1P21304 576 aaKnown RBP6.14□□□□□ -1.43
RPN11YFR004W AAD3P25612 363 aa6.14□□□□□ -1.43
RPN11YFR004W GAC1P28006 793 aa6.14□□□□□ -1.43
RPN11YFR004W MEI4P29467 408 aa6.14□□□□□ -1.43
RPN11YFR004W SSE1P32589 693 aaKnown RBP6.14□□□□□ -1.43
RPN11YFR004W CSE1P33307 960 aa6.14□□□□□ -1.43
RPN11YFR004W TCD2P36101 447 aaKnown RBP6.14□□□□□ -1.43
RPN11YFR004W GIP1P38229 639 aa6.14□□□□□ -1.43
RPN11YFR004W HSM3P38348 480 aa6.14□□□□□ -1.43
RPN11YFR004W MSR1P38714 643 aa6.14□□□□□ -1.43
RPN11YFR004W GIP4P39732 760 aa6.14□□□□□ -1.43
RPN11YFR004W PFK26P40433 827 aaKnown RBP6.14□□□□□ -1.43
RPN11YFR004W TMA108P40462 946 aa6.14□□□□□ -1.43
RPN11YFR004W QDR2P40474 542 aa6.14□□□□□ -1.43
RPN11YFR004W SNZ3P43545 298 aa6.14□□□□□ -1.43
RPN11YFR004W TYW3P53177 273 aa6.14□□□□□ -1.43
RPN11YFR004W BIO4P53630 237 aa6.14□□□□□ -1.43
RPN11YFR004W SNZ2P53824 298 aa6.14□□□□□ -1.43
RPN11YFR004W TEP1P53916 434 aa6.14□□□□□ -1.43
RPN11YFR004W ADI1Q03677 179 aa6.14□□□□□ -1.43
RPN11YFR004W ARO80Q04052 950 aa6.14□□□□□ -1.43
RPN11YFR004W HPF1Q05164 967 aa6.14□□□□□ -1.43
RPN11YFR004W THI7Q05998 598 aa6.14□□□□□ -1.43
RPN11YFR004W GNT1Q12096 491 aa6.14□□□□□ -1.43
RPN11YFR004W RPS31P05759 152 aaKnown RBP6.13□□□□□ -1.43
RPN11YFR004W CHS1P08004 1131 aa6.13□□□□□ -1.43
RPN11YFR004W KIN3P22209 435 aa6.13□□□□□ -1.43
RPN11YFR004W RPC19P28000 142 aaKnown RBP6.13□□□□□ -1.43
RPN11YFR004W URA7P28274 579 aaKnown RBP6.13□□□□□ -1.43
RPN11YFR004W HXT3P32466 567 aaKnown RBP6.13□□□□□ -1.43
RPN11YFR004W NAB2P32505 525 aaKnown RBP RIP-Chip data6.13□□□□□ -1.43not detected
RPN11YFR004W MRP4P32902 394 aa6.13□□□□□ -1.43
RPN11YFR004W FZO1P38297 855 aa6.13□□□□□ -1.43
RPN11YFR004W SWC5P38326 303 aa6.13□□□□□ -1.43
RPN11YFR004W RFC3P38629 340 aa6.13□□□□□ -1.43
RPN11YFR004W STN1P38960 494 aa6.13□□□□□ -1.43
RPN11YFR004W SCC4P40090 624 aa6.13□□□□□ -1.43
RPN11YFR004W YIL161WP40449 235 aaKnown RBP6.13□□□□□ -1.43
RPN11YFR004W YIL054WP40524 105 aa6.13□□□□□ -1.43
RPN11YFR004W YIR007WP40566 764 aa6.13□□□□□ -1.43
RPN11YFR004W TIM54P47045 478 aa6.13□□□□□ -1.43
RPN11YFR004W HLJ1P48353 224 aa6.13□□□□□ -1.43
RPN11YFR004W GNP1P48813 663 aa6.13□□□□□ -1.43
RPN11YFR004W MND1P53102 219 aa6.13□□□□□ -1.43
RPN11YFR004W YNL144CP53907 740 aa6.13□□□□□ -1.43
RPN11YFR004W SEG1Q04279 960 aa6.13□□□□□ -1.43
RPN11YFR004W BUD22Q04347 519 aaKnown RBP6.13□□□□□ -1.43
RPN11YFR004W ADE13Q05911 482 aaKnown RBP6.13□□□□□ -1.43
RPN11YFR004W YET3Q07451 203 aa6.13□□□□□ -1.43
RPN11YFR004W AIM39Q08223 395 aa6.13□□□□□ -1.43
RPN11YFR004W YPR027CQ12079 277 aa6.13□□□□□ -1.43
RPN11YFR004W YGR161W-CQ3E744 92 aa6.13□□□□□ -1.43
RPN11YFR004W YPT6Q99260 215 aa6.13□□□□□ -1.43
RPN11YFR004W CCP1P00431 361 aa6.12□□□□□ -1.43
RPN11YFR004W ILS1P09436 1072 aaKnown RBP6.12□□□□□ -1.43
RPN11YFR004W REC107P21651 314 aa6.12□□□□□ -1.43
RPN11YFR004W VBA3P25594 458 aa6.12□□□□□ -1.43
RPN11YFR004W YCR015CP25616 317 aa6.12□□□□□ -1.43
RPN11YFR004W CDC20P26309 610 aa6.12□□□□□ -1.43
RPN11YFR004W TOA1P32773 286 aa6.12□□□□□ -1.43
RPN11YFR004W MRE11P32829 692 aa6.12□□□□□ -1.43
RPN11YFR004W PDR3P33200 976 aa6.12□□□□□ -1.43
RPN11YFR004W SRB2P34162 210 aa6.12□□□□□ -1.43
RPN11YFR004W VBA5P36172 582 aa6.12□□□□□ -1.43
RPN11YFR004W ETR1P38071 380 aa6.12□□□□□ -1.43
RPN11YFR004W GEM1P39722 662 aa6.12□□□□□ -1.43
RPN11YFR004W LIA1P47120 325 aaKnown RBP6.12□□□□□ -1.43
RPN11YFR004W RNR4P49723 345 aaKnown RBP6.12□□□□□ -1.43
RPN11YFR004W TAF6P53040 516 aa6.12□□□□□ -1.43
RPN11YFR004W BET4Q00618 327 aa6.12□□□□□ -1.43
Retrieved 100 of 5,963 RNA–protein pairs in 15.3 ms