RNA–Protein interactions for RNA: ENST00000635450.2

LINC00339-209, long intergenic non-protein coding RNA 339, humanhuman

TSL 5

Gene LINC00339, Length 947 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-209ENST00000635450 TMOD4Q9NZQ9 345 aa18.75■□□□□ 0.59
LINC00339-209ENST00000635450 BIN2Q9UBW5 565 aaPredicted RBP18.75■□□□□ 0.59
LINC00339-209ENST00000635450 CYP2D7A0A087X1C5 515 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 IGHDP01880 384 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 HOXA7P31268 230 aaPredicted RBP18.74■□□□□ 0.59
LINC00339-209ENST00000635450 GCLCP48506 637 aaPredicted RBP18.74■□□□□ 0.59
LINC00339-209ENST00000635450 HERVK_113P62684 666 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 PABPC4Q13310 644 aaKnown RBP eCLIP18.74■□□□□ 0.59
LINC00339-209ENST00000635450 RAB3GAP1Q15042 981 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 UBE3CQ15386 1083 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 CERKLQ49MI3 558 aaPredicted RBP18.74■□□□□ 0.59
LINC00339-209ENST00000635450 CLEC10AQ8IUN9 316 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 OTUD7AQ8TE49 926 aaPredicted RBP18.74■□□□□ 0.59
LINC00339-209ENST00000635450 GINM1Q9NU53 330 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 MCM9Q9NXL9 1143 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 MORF4L1Q9UBU8 362 aa18.74■□□□□ 0.59
LINC00339-209ENST00000635450 GREB1LQ9C091 1923 aaPredicted RBP18.73■□□□□ 0.59
LINC00339-209ENST00000635450 POLR3DP05423 398 aaPredicted RBP18.73■□□□□ 0.59
LINC00339-209ENST00000635450 ABCB5Q2M3G0 1257 aa18.73■□□□□ 0.59
LINC00339-209ENST00000635450 LRRFIP1Q32MZ4 808 aaKnown RBP18.73■□□□□ 0.59
LINC00339-209ENST00000635450 TTC6Q86TZ1 520 aa18.73■□□□□ 0.59
LINC00339-209ENST00000635450 KBTBD3Q8NAB2 608 aa18.73■□□□□ 0.59
LINC00339-209ENST00000635450 DYNLL2Q96FJ2 89 aa18.73■□□□□ 0.59
LINC00339-209ENST00000635450 LNPKQ9C0E8 428 aa18.73■□□□□ 0.59
LINC00339-209ENST00000635450 RNF208Q9H0X6 261 aa18.73■□□□□ 0.59
LINC00339-209ENST00000635450 FRMPD3Q5JV73 1810 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 C19orf81C9J6K1 198 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 TRIM32Q13049 653 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 IRF5Q13568 498 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 SEPT2Q15019 361 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 USP17L2Q6R6M4 530 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 PI4K2BQ8TCG2 481 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 COA7Q96BR5 231 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 FEZ1Q99689 392 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 RBPJLQ9UBG7 517 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 GJD2Q9UKL4 321 aa18.72■□□□□ 0.59
LINC00339-209ENST00000635450 GJB1P08034 283 aa18.71■□□□□ 0.59
LINC00339-209ENST00000635450 VCAM1P19320 739 aa18.71■□□□□ 0.59
LINC00339-209ENST00000635450 UBE2Q1Q7Z7E8 422 aa18.71■□□□□ 0.59
LINC00339-209ENST00000635450 C12orf42Q96LP6 360 aa18.71■□□□□ 0.59
LINC00339-209ENST00000635450 PAGR1Q9BTK6 254 aa18.71■□□□□ 0.59
LINC00339-209ENST00000635450 PUS7LQ9H0K6 701 aaKnown RBP18.71■□□□□ 0.59
LINC00339-209ENST00000635450 PORCNQ9H237 461 aa18.71■□□□□ 0.59
LINC00339-209ENST00000635450 COL11A1P12107 1806 aaPredicted RBP18.71■□□□□ 0.59
LINC00339-209ENST00000635450 SALL3Q9BXA9 1300 aa18.71■□□□□ 0.59
LINC00339-209ENST00000635450 A0A1W2PRG0 241 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 CNMDO75829 334 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 ZFYP08048 801 aaPredicted RBP18.7■□□□□ 0.58
LINC00339-209ENST00000635450 GJA8P48165 433 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 PDE1AP54750 535 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 UBXN2AP68543 259 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 Q3C1V9 767 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 CHD1LQ86WJ1 897 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 PXYLP1Q8TE99 480 aa18.7■□□□□ 0.58
LINC00339-209ENST00000635450 U2AF1L4Q8WU68 220 aaKnown RBP18.7■□□□□ 0.58
LINC00339-209ENST00000635450 TRIOBPQ9H2D6 2365 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 ERVK-9P63128 1117 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 ERVK-24P63145 666 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 NUCB1Q02818 461 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 KIAA1755Q5JYT7 1200 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 FSD1Q9BTV5 496 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 KIAA1683Q9H0B3 1180 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 STAP2Q9UGK3 403 aa18.69■□□□□ 0.58
LINC00339-209ENST00000635450 MPHOSPH10O00566 681 aaKnown RBP18.68■□□□□ 0.58
LINC00339-209ENST00000635450 RNF113AO15541 343 aaKnown RBP18.68■□□□□ 0.58
LINC00339-209ENST00000635450 AKR1B1P15121 316 aa18.68■□□□□ 0.58
LINC00339-209ENST00000635450 TRIB2Q92519 343 aa18.68■□□□□ 0.58
LINC00339-209ENST00000635450 DDRGK1Q96HY6 314 aa18.68■□□□□ 0.58
LINC00339-209ENST00000635450 DEFB118Q96PH6 123 aa18.68■□□□□ 0.58
LINC00339-209ENST00000635450 PAK6Q9NQU5 681 aaPredicted RBP18.68■□□□□ 0.58
LINC00339-209ENST00000635450 CYP2B6P20813 491 aa18.67■□□□□ 0.58
LINC00339-209ENST00000635450 GPRC5AQ8NFJ5 357 aa18.67■□□□□ 0.58
LINC00339-209ENST00000635450 APPBP2Q92624 585 aa18.67■□□□□ 0.58
LINC00339-209ENST00000635450 RPAP3Q9H6T3 665 aaPredicted RBP18.67■□□□□ 0.58
LINC00339-209ENST00000635450 CABP5Q9NP86 173 aa18.67■□□□□ 0.58
LINC00339-209ENST00000635450 ATP8A2Q9NTI2 1148 aa18.67■□□□□ 0.58
LINC00339-209ENST00000635450 RANBP2P49792 3224 aaKnown RBP18.67■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L12C9JPN9 530 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L21D6R901 530 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 HMGCRP04035 888 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 C12orf60Q5U649 245 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 AMOTL1Q8IY63 956 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 EVI5LQ96CN4 794 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 BTBD7Q9P203 1132 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 SLC4A4Q9Y6R1 1079 aa18.66■□□□□ 0.58
LINC00339-209ENST00000635450 MYH4Q9Y623 1939 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 SPDYE16A6NNV3 312 aaPredicted RBP18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L15C9J2P7 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L13C9JLJ4 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L11C9JVI0 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L18D6R9N7 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L22D6RA61 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L17D6RBQ6 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L19D6RCP7 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L20D6RJB6 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 H0YGN5 161 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 FARP2O94887 1054 aaPredicted RBP18.65■□□□□ 0.58
LINC00339-209ENST00000635450 SGPL1O95470 568 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 USP17L24Q0WX57 530 aa18.65■□□□□ 0.58
LINC00339-209ENST00000635450 CCL14Q16627 93 aa18.65■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 18.6 ms