RNA–Protein interactions for RNA: ENST00000591534.5

BRCA1-226, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-226ENST00000591534 U2AF1L4Q8WU68 220 aaKnown RBP11.58□□□□□ -0.56
BRCA1-226ENST00000591534 AS3MTQ9HBK9 375 aa11.58□□□□□ -0.56
BRCA1-226ENST00000591534 RAI14Q9P0K7 980 aa11.58□□□□□ -0.56
BRCA1-226ENST00000591534 LRP2BPQ9P2M1 347 aa11.58□□□□□ -0.56
BRCA1-226ENST00000591534 ATRNL1Q5VV63 1379 aa11.57□□□□□ -0.56
BRCA1-226ENST00000591534 FARP2O94887 1054 aaPredicted RBP11.57□□□□□ -0.56
BRCA1-226ENST00000591534 SGPL1O95470 568 aa11.57□□□□□ -0.56
BRCA1-226ENST00000591534 FLT3LGP49771 235 aa11.57□□□□□ -0.56
BRCA1-226ENST00000591534 FAM110CQ1W6H9 321 aa11.57□□□□□ -0.56
BRCA1-226ENST00000591534 SH3BP5LQ7L8J4 393 aa11.57□□□□□ -0.56
BRCA1-226ENST00000591534 ZNF280CQ8ND82 737 aa11.57□□□□□ -0.56
BRCA1-226ENST00000591534 YTHDC1Q96MU7 727 aaKnown RBP11.57□□□□□ -0.56
BRCA1-226ENST00000591534 TRIM34Q9BYJ4 488 aa11.57□□□□□ -0.56
BRCA1-226ENST00000591534 DHX36Q9H2U1 1008 aaKnown RBP11.57□□□□□ -0.56
BRCA1-226ENST00000591534 HERC5Q9UII4 1024 aaKnown RBP11.57□□□□□ -0.56
BRCA1-226ENST00000591534 RFX7Q2KHR2 1363 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 USP17L5A8MUK1 530 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 TRIM6-TRIM34B2RNG4 842 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 PSEN2P49810 448 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 CCDC158Q5M9N0 1113 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 ANKRD13CQ8N6S4 541 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 TATDN2Q93075 761 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 NSUN4Q96CB9 384 aaKnown RBP11.56□□□□□ -0.56
BRCA1-226ENST00000591534 SHISA4Q96DD7 197 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 PCMTD1Q96MG8 357 aaPredicted RBP11.56□□□□□ -0.56
BRCA1-226ENST00000591534 DDX4Q9NQI0 724 aaKnown RBP11.56□□□□□ -0.56
BRCA1-226ENST00000591534 POLR3EQ9NVU0 708 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 HMG20BQ9P0W2 317 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 PI4KBQ9UBF8 816 aa11.56□□□□□ -0.56
BRCA1-226ENST00000591534 FAM205CA6NFA0 338 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 BCAR3O75815 825 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 INHAP05111 366 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 ARID4AP29374 1257 aaPredicted RBP11.55□□□□□ -0.56
BRCA1-226ENST00000591534 RHBDL3P58872 404 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 SPP2Q13103 211 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 ATF7IPQ6VMQ6 1270 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 TEX11Q8IYF3 940 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 UNC93B1Q9H1C4 597 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 GOPCQ9HD26 462 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 GINM1Q9NU53 330 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 TMOD4Q9NZQ9 345 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 GABRQQ9UN88 632 aa11.55□□□□□ -0.56
BRCA1-226ENST00000591534 A0A1W2PPC1 479 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 ASNSP08243 561 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 CAP2P40123 477 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 OS9Q13438 667 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-226ENST00000591534 TTC39AQ5SRH9 613 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 NAA16Q6N069 864 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-226ENST00000591534 UBE2Q1Q7Z7E8 422 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 CERS3Q8IU89 383 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 FRAT1Q92837 279 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-226ENST00000591534 DEFB118Q96PH6 123 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 HS3ST6Q96QI5 342 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 GPR108Q9NPR9 543 aa11.54□□□□□ -0.56
BRCA1-226ENST00000591534 COL2A1P02458 1487 aaPredicted RBP11.54□□□□□ -0.56
BRCA1-226ENST00000591534 AK9Q5TCS8 1911 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 HMGCRP04035 888 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 ELNP15502 786 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 IRX3P78415 501 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-226ENST00000591534 SH3D19Q5HYK7 790 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 POTEEQ6S8J3 1075 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 TBC1D9Q6ZT07 1266 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 NECAB2Q7Z6G3 386 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 PACS2Q86VP3 889 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 FOXP4Q8IVH2 680 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-226ENST00000591534 CCAR1Q8IX12 1150 aaKnown RBP11.53□□□□□ -0.56
BRCA1-226ENST00000591534 CRACR2BQ8N4Y2 399 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-226ENST00000591534 ANKLE1Q8NAG6 615 aa11.53□□□□□ -0.56
BRCA1-226ENST00000591534 GTF3C2Q8WUA4 911 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-226ENST00000591534 PAK6Q9NQU5 681 aaPredicted RBP11.53□□□□□ -0.56
BRCA1-226ENST00000591534 MYH13Q9UKX3 1938 aa11.52□□□□□ -0.56
BRCA1-226ENST00000591534 C19orf81C9J6K1 198 aa11.52□□□□□ -0.57
BRCA1-226ENST00000591534 HLA-DOAP06340 250 aa11.52□□□□□ -0.57
BRCA1-226ENST00000591534 TRIM27P14373 513 aa11.52□□□□□ -0.57
BRCA1-226ENST00000591534 HMGCS2P54868 508 aa11.52□□□□□ -0.57
BRCA1-226ENST00000591534 SKIV2LQ15477 1246 aaKnown RBP11.52□□□□□ -0.57
BRCA1-226ENST00000591534 VARS2Q5ST30 1063 aaKnown RBP11.52□□□□□ -0.57
BRCA1-226ENST00000591534 TREML2Q5T2D2 321 aa11.52□□□□□ -0.57
BRCA1-226ENST00000591534 TMED8Q6PL24 325 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-226ENST00000591534 SPNS2Q8IVW8 549 aa11.52□□□□□ -0.57
BRCA1-226ENST00000591534 TRMT44Q8IYL2 757 aaKnown RBP11.52□□□□□ -0.57
BRCA1-226ENST00000591534 WDR18Q9BV38 432 aa11.52□□□□□ -0.57
BRCA1-226ENST00000591534 HMX1Q9NP08 348 aaPredicted RBP11.52□□□□□ -0.57
BRCA1-226ENST00000591534 ZBTB7BO15156 539 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-226ENST00000591534 MCAMP43121 646 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 BACE1P56817 501 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 PPP4CP60510 307 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 PDE3AQ14432 1141 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 ZKSCAN2Q63HK3 967 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 GPRC5AQ8NFJ5 357 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 SH3RF3Q8TEJ3 882 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-226ENST00000591534 SOCS4Q8WXH5 440 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 XRN2Q9H0D6 950 aaKnown RBP eCLIP11.51□□□□□ -0.57
BRCA1-226ENST00000591534 ASCC2Q9H1I8 757 aaPredicted RBP11.51□□□□□ -0.57
BRCA1-226ENST00000591534 AATFQ9NY61 560 aaKnown RBP eCLIP11.51□□□□□ -0.57
BRCA1-226ENST00000591534 KIAA1468Q9P260 1216 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 RPTORQ8N122 1335 aa11.51□□□□□ -0.57
BRCA1-226ENST00000591534 FAM196BA6NMK8 535 aa11.5□□□□□ -0.57
BRCA1-226ENST00000591534 USP17L10C9JJH3 530 aa11.5□□□□□ -0.57
BRCA1-226ENST00000591534 MAPK4P31152 587 aa11.5□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms