RNA–Protein interactions for RNA: ENST00000581226.1

SMCHD1-204, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 459 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-204ENST00000581226 CEP131Q9UPN4 1083 aa7.35□□□□□ -1.23
SMCHD1-204ENST00000581226 COBLO75128 1261 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 ATF4P18848 351 aaPredicted RBP7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 HOXA10P31260 410 aaPredicted RBP7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 GBP1P32455 592 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 CDCP2Q5VXM1 449 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 NLRC3Q7RTR2 1065 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 FAM181AQ8N9Y4 354 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 BAHD1Q8TBE0 780 aaPredicted RBP7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 KRTAP9-9Q9BYP9 154 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 KRTAP9-4Q9BYQ2 154 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 CNNM2Q9H8M5 875 aa7.34□□□□□ -1.23
SMCHD1-204ENST00000581226 KRTAP4-8A0A0G2JLE6 195 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 MEIS3P2A8K0S8 358 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 NME1P15531 152 aaKnown RBP7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 CYP7A1P22680 504 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 SSTR4P31391 388 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 ETV3P41162 512 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 CHMP4BP1P59074 171 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 INTS5Q6P9B9 1019 aaKnown RBP7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 DNAJB8Q8NHS0 232 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 PPP1R13LQ8WUF5 828 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 SRRTQ9BXP5 876 aaKnown RBP7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 MAPK8IP1Q9UQF2 711 aa7.33□□□□□ -1.24
SMCHD1-204ENST00000581226 CNTNAP4Q9C0A0 1308 aa7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 IGF2BP3O00425 579 aaKnown RBP eCLIP7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 RGS13O14921 159 aa7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 EIF6P56537 245 aaKnown RBP7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 ARID5AQ03989 594 aa7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 NAALADL2Q58DX5 795 aa7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 SFRP5Q5T4F7 317 aa7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 SLC43A3Q8NBI5 491 aa7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 ZC3H7BQ9UGR2 993 aaKnown RBP7.32□□□□□ -1.24
SMCHD1-204ENST00000581226 GNAT3A8MTJ3 354 aa7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 CBX7O95931 251 aa7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 ITIH2P19823 946 aa7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 POLR2BP30876 1174 aaKnown RBP7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 DNAJA1P31689 397 aaKnown RBP7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 OXCT1P55809 520 aa7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 RBBP8NLQ8NC74 664 aaPredicted RBP7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 BUD13Q9BRD0 619 aaKnown RBP eCLIP7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 MKNK2Q9HBH9 465 aa7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 U3KQE9 123 aa7.31□□□□□ -1.24
SMCHD1-204ENST00000581226 MED26O95402 600 aa7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 SSBP05455 408 aaKnown RBP eCLIP7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 GIPRP48546 466 aa7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 LSRQ86X29 649 aaPredicted RBP7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 PLD6Q8N2A8 252 aaKnown RBP7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 SHDQ96IW2 340 aa7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 COX4I2Q96KJ9 171 aa7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 SLC9A7Q96T83 725 aa7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 TM9SF2Q99805 663 aa7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 STRIP2Q9ULQ0 834 aa7.3□□□□□ -1.24
SMCHD1-204ENST00000581226 FAM86C2PA6NEL3 165 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 PRR33A8MZF0 331 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 RBAK-RBAKDNI3L0D1 243 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 TNFRSF10CO14798 259 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 UBOX5O94941 541 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 CD97P48960 835 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 INTS3Q68E01 1043 aaKnown RBP7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 RUFY4Q6ZNE9 571 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 NETO1Q8TDF5 533 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 ANAPC16Q96DE5 110 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 KREMEN1Q96MU8 473 aa7.29□□□□□ -1.24
SMCHD1-204ENST00000581226 BTBD11A6QL63 1104 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 FAM155AB1AL88 458 aaPredicted RBP7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 CEACAM5P06731 702 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 GUCY2CP25092 1073 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 CCNFP41002 786 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 KIR3DL1P43629 444 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 MSMPQ1L6U9 139 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 MFSD4AQ8N468 514 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 TAB3Q8N5C8 712 aaPredicted RBP7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 OR6P1Q8NGX9 317 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 C8orf37Q96NL8 207 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 PLAGL2Q9UPG8 496 aa7.28□□□□□ -1.24
SMCHD1-204ENST00000581226 ZNF865P0CJ78 1059 aaPredicted RBP7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 ACRP10323 421 aa7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 IFI16Q16666 785 aaKnown RBP7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 C22orf34Q6ZV56 151 aa7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 RNF141Q8WVD5 230 aa7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 GMLQ99445 158 aa7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 PCMTD2Q9NV79 361 aa7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 BSDC1Q9NW68 430 aaPredicted RBP7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 MRVI1Q9Y6F6 885 aa7.27□□□□□ -1.25
SMCHD1-204ENST00000581226 TMEM265A0A087WTH1 108 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 KIAA1324LA8MWY0 1029 aaPredicted RBP7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 CLEC3AO75596 197 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 FGRP09769 529 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 LRP8Q14114 963 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 NKPD1Q17RQ9 610 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 CDKAL1Q5VV42 579 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 DTX1Q86Y01 620 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 MCF2L2Q86YR7 1114 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 TMEM192Q8IY95 271 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 DHRS1Q96LJ7 313 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 ASPNQ9BXN1 380 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 CAPN6Q9Y6Q1 641 aa7.26□□□□□ -1.25
SMCHD1-204ENST00000581226 COL17A1Q9UMD9 1497 aaPredicted RBP7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms