RNA–Protein interactions for RNA: ENST00000576019.5

VPS53-219, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 613 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-219ENST00000576019 ATP7BP35670 1465 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 CDC42BPGQ6DT37 1551 aa7.53□□□□□ -1.2
VPS53-219ENST00000576019 PAGE1O75459 146 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 ALDH1L1O75891 902 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 ATP4AP20648 1035 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 GNALP38405 381 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 STAT3P40763 770 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 RPIAP49247 311 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 SOX10P56693 466 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 TYRO3Q06418 890 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 CWF19L2Q2TBE0 894 aaKnown RBP7.52□□□□□ -1.21
VPS53-219ENST00000576019 CT47A1Q5JQC4 288 aaPredicted RBP7.52□□□□□ -1.21
VPS53-219ENST00000576019 TSHZ1Q6ZSZ6 1077 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 UBR7Q8N806 425 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 JARID2Q92833 1246 aaPredicted RBP7.52□□□□□ -1.21
VPS53-219ENST00000576019 MFSD3Q96ES6 412 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 GRIP2Q9C0E4 1043 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 BRMS1Q9HCU9 246 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 SALL4Q9UJQ4 1053 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 ZNRF3Q9ULT6 936 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 PCDHB5Q9Y5E4 795 aa7.52□□□□□ -1.21
VPS53-219ENST00000576019 VCANP13611 3396 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 KIF1AQ12756 1690 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 CCNB3Q8WWL7 1395 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 ROBO2Q9HCK4 1378 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 TSPAN6O43657 245 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 ACPPP15309 386 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 ZNF165P49910 485 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 UBE4AQ14139 1066 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 LRRC41Q15345 812 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 TTF1Q15361 905 aaPredicted RBP7.51□□□□□ -1.21
VPS53-219ENST00000576019 TM4SF20Q53R12 229 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 C6orf15Q6UXA7 325 aaPredicted RBP7.51□□□□□ -1.21
VPS53-219ENST00000576019 TRIM42Q8IWZ5 723 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 NIM1KQ8IY84 436 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 SYNPOQ8N3V7 929 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 ITPKCQ96DU7 683 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 ZFAND3Q9H8U3 227 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 RRAGCQ9HB90 399 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 DZANK1Q9NVP4 752 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 PKD1L3Q7Z443 1732 aa7.51□□□□□ -1.21
VPS53-219ENST00000576019 ARHGEF10O15013 1369 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 LMNB1P20700 586 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 CLCQ05315 142 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 ARSJQ5FYB0 599 aaPredicted RBP7.5□□□□□ -1.21
VPS53-219ENST00000576019 MRM1Q6IN84 353 aaKnown RBP7.5□□□□□ -1.21
VPS53-219ENST00000576019 CCSAPQ6IQ19 270 aaPredicted RBP7.5□□□□□ -1.21
VPS53-219ENST00000576019 RUFY4Q6ZNE9 571 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 ZSWIM2Q8NEG5 633 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 GATAD2BQ8WXI9 593 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 MRGPRX2Q96LB1 330 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 CEP63Q96MT8 703 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 CNTNAP3BQ96NU0 1288 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 NECAB3Q96P71 396 aaPredicted RBP7.5□□□□□ -1.21
VPS53-219ENST00000576019 ZKSCAN3Q9BRR0 538 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 CNTNAP3Q9BZ76 1288 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 BCL9O00512 1426 aa7.5□□□□□ -1.21
VPS53-219ENST00000576019 SPTBN5Q9NRC6 3674 aaKnown RBP7.49□□□□□ -1.21
VPS53-219ENST00000576019 METTL12A8MUP2 240 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 PHF20L1A8MW92 1017 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 CD2BP2O95400 341 aaKnown RBP7.49□□□□□ -1.21
VPS53-219ENST00000576019 ZIC2O95409 532 aaPredicted RBP7.49□□□□□ -1.21
VPS53-219ENST00000576019 PLA2G5P39877 138 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 GRIA4P48058 902 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 NFKB2Q00653 900 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 MPP2Q14168 576 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 PPP2R5AQ15172 486 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 RALBP1Q15311 655 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 NFE2Q16621 373 aaPredicted RBP7.49□□□□□ -1.21
VPS53-219ENST00000576019 KRT25Q7Z3Z0 450 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 CCNJLQ8IV13 435 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 NINJ1Q92982 152 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 RELTQ969Z4 430 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 ZIC5Q96T25 663 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 COL25A1Q9BXS0 654 aaPredicted RBP7.49□□□□□ -1.21
VPS53-219ENST00000576019 MIR1-1HGQ9H1L0 117 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 CAAP1Q9H8G2 361 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 PRDM6Q9NQX0 595 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 GPN3Q9UHW5 284 aaPredicted RBP7.49□□□□□ -1.21
VPS53-219ENST00000576019 MCM8Q9UJA3 840 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 PNPLA7Q6ZV29 1317 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 IGSF1Q8N6C5 1336 aa7.49□□□□□ -1.21
VPS53-219ENST00000576019 FAM221AA4D161 298 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 ALG1L2C9J202 215 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 PLIN1O60240 522 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 PDE8AO60658 829 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 PPFIA4O75335 1185 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 TRPA1O75762 1119 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 ALDH1A1P00352 501 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 EGFRP00533 1210 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 FAM153BP0C7A2 387 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 PAX3P23760 479 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 EPHB1P54762 984 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 CASP7P55210 303 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 RPS26P62854 115 aaKnown RBP7.48□□□□□ -1.21
VPS53-219ENST00000576019 MAP2K1Q02750 393 aaPredicted RBP7.48□□□□□ -1.21
VPS53-219ENST00000576019 SPRED3Q2MJR0 410 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 TMEM67Q5HYA8 995 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 KRT28Q7Z3Y7 464 aa7.48□□□□□ -1.21
VPS53-219ENST00000576019 REC114Q7Z4M0 266 aa7.48□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms