RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 TRIM8Q9BZR9 551 aa6.83□□□□□ -1.32
USP47-204ENST00000525078 CLEC4MQ9H2X3 399 aaPredicted RBP6.83□□□□□ -1.32
USP47-204ENST00000525078 TLR7Q9NYK1 1049 aaKnown RBP6.83□□□□□ -1.32
USP47-204ENST00000525078 LUC7L2Q9Y383 392 aaKnown RBP6.83□□□□□ -1.32
USP47-204ENST00000525078 TNKSO95271 1327 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 RASSF10A6NK89 507 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 TCEA3O75764 348 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 DNAJC8O75937 253 aaPredicted RBP6.82□□□□□ -1.32
USP47-204ENST00000525078 ABLIM3O94929 683 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 FBXO21O94952 628 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 MYL3P08590 195 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 ACRP10323 421 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 PYGMP11217 842 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 MAN1A1P33908 653 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 SOX18P35713 384 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 DGKGP49619 791 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 PTPN11Q06124 597 aaPredicted RBP6.82□□□□□ -1.32
USP47-204ENST00000525078 MAPRE1Q15691 268 aaKnown RBP6.82□□□□□ -1.32
USP47-204ENST00000525078 MINDY4Q4G0A6 757 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 INTS3Q68E01 1043 aaKnown RBP6.82□□□□□ -1.32
USP47-204ENST00000525078 OVOS1Q6IE37 1185 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 NLRC3Q7RTR2 1065 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 MORC1Q86VD1 984 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 TPH2Q8IWU9 490 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 CPXCR1Q8N123 301 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 ANKRD42Q8N9B4 389 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 VPS37AQ8NEZ2 397 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 PJA1Q8NG27 643 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 PAGR1Q9BTK6 254 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 SARGQ9BW04 601 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 MUC3BQ9H195 1237 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 IFT22Q9H7X7 185 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 GPAMQ9HCL2 828 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 GMIPQ9P107 970 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 ZFATQ9P243 1243 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 NDOR1Q9UHB4 597 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 RCAN3Q9UKA8 241 aa6.82□□□□□ -1.32
USP47-204ENST00000525078 TNPO3Q9Y5L0 923 aaKnown RBP6.82□□□□□ -1.32
USP47-204ENST00000525078 WIPF1O43516 503 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 SNUPNO95149 360 aaKnown RBP6.81□□□□□ -1.32
USP47-204ENST00000525078 NME1P15531 152 aaKnown RBP6.81□□□□□ -1.32
USP47-204ENST00000525078 NFKB1P19838 968 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 FLT3P36888 993 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 COBLL1Q53SF7 1204 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 WDR44Q5JSH3 913 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 FAM83BQ5T0W9 1011 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 PI4K2BQ8TCG2 481 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 STK35Q8TDR2 534 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 KLHL6Q8WZ60 621 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 ATG4CQ96DT6 458 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 STK17AQ9UEE5 414 aa6.81□□□□□ -1.32
USP47-204ENST00000525078 PRODHO43272 600 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 CTSOP43234 321 aaPredicted RBP6.8□□□□□ -1.32
USP47-204ENST00000525078 KCNQ4P56696 695 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 PCDH1Q08174 1060 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 LCE2CQ5TA81 110 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 MAP1SQ66K74 1059 aaPredicted RBP6.8□□□□□ -1.32
USP47-204ENST00000525078 CCDC70Q6NSX1 233 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 TEX19Q8NA77 164 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 OR2W6PQ8NHA6 318 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 USP33Q8TEY7 942 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 SLC9A7Q96T83 725 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 ELAC2Q9BQ52 826 aaKnown RBP6.8□□□□□ -1.32
USP47-204ENST00000525078 TSEN34Q9BSV6 310 aaKnown RBP6.8□□□□□ -1.32
USP47-204ENST00000525078 KLF16Q9BXK1 252 aaPredicted RBP6.8□□□□□ -1.32
USP47-204ENST00000525078 RUBCNLQ9H714 662 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 XPO5Q9HAV4 1204 aaKnown RBP eCLIP6.8□□□□□ -1.32
USP47-204ENST00000525078 OSGEPQ9NPF4 335 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 SUCOQ9UBS9 1254 aaKnown RBP6.8□□□□□ -1.32
USP47-204ENST00000525078 REV1Q9UBZ9 1251 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 FAM50BQ9Y247 325 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 SCINQ9Y6U3 715 aa6.8□□□□□ -1.32
USP47-204ENST00000525078 FAM83GA6ND36 823 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 SLC22A31A6NKX4 558 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 NFKBIEO00221 500 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 ASLP04424 464 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 RHOQP17081 205 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 SMPD1P17405 629 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 POU3F2P20265 443 aaPredicted RBP6.79□□□□□ -1.32
USP47-204ENST00000525078 HTR3AP46098 478 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 PPP2R2AP63151 447 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 SFSWAPQ12872 951 aaKnown RBP6.79□□□□□ -1.32
USP47-204ENST00000525078 SEPT7Q16181 437 aaKnown RBP6.79□□□□□ -1.32
USP47-204ENST00000525078 ABCB5Q2M3G0 1257 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 CFAP100Q494V2 611 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 L1TD1Q5T7N2 865 aaKnown RBP6.79□□□□□ -1.32
USP47-204ENST00000525078 ERAP2Q6P179 960 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 NSMFQ6X4W1 530 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 UBE2R2Q712K3 238 aaPredicted RBP6.79□□□□□ -1.32
USP47-204ENST00000525078 LYSMD3Q7Z3D4 306 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 BRAPQ7Z569 592 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 RUNDC1Q96C34 613 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 CLIP3Q96DZ5 547 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 ACSBG1Q96GR2 724 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 STRBPQ96SI9 672 aaKnown RBP6.79□□□□□ -1.32
USP47-204ENST00000525078 RASSF4Q9H2L5 321 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 JADE2Q9NQC1 790 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 FAM86C1Q9NVL1 165 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 KLHL3Q9UH77 587 aa6.79□□□□□ -1.32
USP47-204ENST00000525078 ZNF214Q9UL59 606 aaPredicted RBP6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms