RNA–Protein interactions for RNA: ENST00000525078.1

USP47-204, Transcript of ubiquitin specific peptidase 47, humanhuman

TSL 1 (best)

Gene USP47, Length 978 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP47-204ENST00000525078 AEBP2Q6ZN18 517 aaPredicted RBP19.24■□□□□ 0.67
USP47-204ENST00000525078 CHIC1Q5VXU3 224 aa18.02■□□□□ 0.48
USP47-204ENST00000525078 SENP3Q9H4L4 574 aaPredicted RBP16.38■□□□□ 0.21
USP47-204ENST00000525078 PHF23Q9BUL5 403 aaPredicted RBP16.18■□□□□ 0.18
USP47-204ENST00000525078 FOXD1Q16676 465 aa15.34■□□□□ 0.05
USP47-204ENST00000525078 POTEDQ86YR6 584 aa14.71□□□□□ -0.05
USP47-204ENST00000525078 MSH5O43196 834 aa14.38□□□□□ -0.11
USP47-204ENST00000525078 PLPPR3Q6T4P5 718 aa14.27□□□□□ -0.13
USP47-204ENST00000525078 PIAS4Q8N2W9 510 aaPredicted RBP14.22□□□□□ -0.13
USP47-204ENST00000525078 PPP6R1Q9UPN7 881 aa14.21□□□□□ -0.13
USP47-204ENST00000525078 ADRA2BP18089 450 aa14.13□□□□□ -0.15
USP47-204ENST00000525078 EHMT2Q96KQ7 1210 aa13.31□□□□□ -0.28
USP47-204ENST00000525078 MAPK8IP2Q13387 824 aaPredicted RBP13.07□□□□□ -0.32
USP47-204ENST00000525078 DMRT2Q9Y5R5 561 aa12.98□□□□□ -0.33
USP47-204ENST00000525078 KCNA4P22459 653 aa12.88□□□□□ -0.35
USP47-204ENST00000525078 SCAF1Q9H7N4 1312 aaKnown RBP12.87□□□□□ -0.35
USP47-204ENST00000525078 CSRNP3Q8WYN3 585 aa12.59□□□□□ -0.39
USP47-204ENST00000525078 SLC24A1O60721 1099 aa12.57□□□□□ -0.4
USP47-204ENST00000525078 CACNB1Q02641 598 aaPredicted RBP12.55□□□□□ -0.4
USP47-204ENST00000525078 PPP4R3CPQ6ZMV5 832 aa12.5□□□□□ -0.41
USP47-204ENST00000525078 SLC4A1APQ9BWU0 796 aaKnown RBP12.48□□□□□ -0.41
USP47-204ENST00000525078 HOXD11P31277 338 aaPredicted RBP12.42□□□□□ -0.42
USP47-204ENST00000525078 DCAF8L1A6NGE4 600 aa12.41□□□□□ -0.42
USP47-204ENST00000525078 CNKSR2Q8WXI2 1034 aa12.3□□□□□ -0.44
USP47-204ENST00000525078 RNF39Q9H2S5 420 aa12.29□□□□□ -0.44
USP47-204ENST00000525078 RNF216Q9NWF9 866 aaPredicted RBP12.25□□□□□ -0.45
USP47-204ENST00000525078 RTN4Q9NQC3 1192 aaKnown RBP12.11□□□□□ -0.47
USP47-204ENST00000525078 AMER1Q5JTC6 1135 aaPredicted RBP12.1□□□□□ -0.47
USP47-204ENST00000525078 C1QBPQ07021 282 aaKnown RBP12.08□□□□□ -0.48
USP47-204ENST00000525078 NCBP3Q53F19 620 aaKnown RBP12.04□□□□□ -0.48
USP47-204ENST00000525078 DNAJC5BQ9UF47 199 aa12.03□□□□□ -0.48
USP47-204ENST00000525078 ZBTB22O15209 634 aa11.84□□□□□ -0.51
USP47-204ENST00000525078 NPM3O75607 178 aaKnown RBP11.82□□□□□ -0.52
USP47-204ENST00000525078 GRWD1Q9BQ67 446 aaKnown RBP eCLIP11.8□□□□□ -0.52
USP47-204ENST00000525078 FOXD4L1Q9NU39 408 aa11.57□□□□□ -0.56
USP47-204ENST00000525078 U3KPZ7 1027 aaPredicted RBP11.56□□□□□ -0.56
USP47-204ENST00000525078 SPINK5Q9NQ38 1064 aaPredicted RBP11.47□□□□□ -0.57
USP47-204ENST00000525078 POTEHQ6S545 545 aa11.45□□□□□ -0.58
USP47-204ENST00000525078 DSG3P32926 999 aa11.44□□□□□ -0.58
USP47-204ENST00000525078 CAPN15O75808 1086 aa11.41□□□□□ -0.58
USP47-204ENST00000525078 FKBP8Q14318 412 aa11.4□□□□□ -0.58
USP47-204ENST00000525078 SLC4A2P04920 1241 aa11.35□□□□□ -0.59
USP47-204ENST00000525078 TRHP20396 242 aaPredicted RBP11.18□□□□□ -0.62
USP47-204ENST00000525078 ABCB7O75027 752 aa11.14□□□□□ -0.63
USP47-204ENST00000525078 APLP2Q06481 763 aa11.13□□□□□ -0.63
USP47-204ENST00000525078 ZNF219Q9P2Y4 722 aaPredicted RBP11.13□□□□□ -0.63
USP47-204ENST00000525078 PLCB2Q00722 1185 aa11.1□□□□□ -0.63
USP47-204ENST00000525078 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP11.09□□□□□ -0.63
USP47-204ENST00000525078 HNRNPUL2Q1KMD3 747 aaKnown RBP11.09□□□□□ -0.63
USP47-204ENST00000525078 PRKCSHP14314 528 aaPredicted RBP11.07□□□□□ -0.64
USP47-204ENST00000525078 BCANQ96GW7 911 aa11.06□□□□□ -0.64
USP47-204ENST00000525078 ATXN8OSP0DMR3 200 aa11.04□□□□□ -0.64
USP47-204ENST00000525078 HAP1P54257 671 aaPredicted RBP11.04□□□□□ -0.64
USP47-204ENST00000525078 SAMD1Q6SPF0 538 aaPredicted RBP11.04□□□□□ -0.64
USP47-204ENST00000525078 TAOK2Q9UL54 1235 aa10.96□□□□□ -0.65
USP47-204ENST00000525078 MYCNP04198 464 aaPredicted RBP10.92□□□□□ -0.66
USP47-204ENST00000525078 POLA2Q14181 598 aa10.86□□□□□ -0.67
USP47-204ENST00000525078 RBM42Q9BTD8 480 aaKnown RBP10.86□□□□□ -0.67
USP47-204ENST00000525078 DCAF8L2P0C7V8 631 aa10.85□□□□□ -0.67
USP47-204ENST00000525078 TPRNQ4KMQ1 711 aa10.82□□□□□ -0.68
USP47-204ENST00000525078 VSIG10Q8N0Z9 540 aa10.81□□□□□ -0.68
USP47-204ENST00000525078 CHRDL2Q6WN34 429 aa10.74□□□□□ -0.69
USP47-204ENST00000525078 FBXO3Q9UK99 471 aa10.71□□□□□ -0.69
USP47-204ENST00000525078 ATF5Q9Y2D1 282 aaPredicted RBP10.71□□□□□ -0.69
USP47-204ENST00000525078 DAXXQ9UER7 740 aaPredicted RBP10.61□□□□□ -0.71
USP47-204ENST00000525078 AKT1S1Q96B36 256 aa10.6□□□□□ -0.71
USP47-204ENST00000525078 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.56□□□□□ -0.72
USP47-204ENST00000525078 ZBTB12Q9Y330 459 aaPredicted RBP10.56□□□□□ -0.72
USP47-204ENST00000525078 TIMELESSQ9UNS1 1208 aa10.55□□□□□ -0.72
USP47-204ENST00000525078 KDM2AQ9Y2K7 1162 aa10.55□□□□□ -0.72
USP47-204ENST00000525078 REM2Q8IYK8 340 aaPredicted RBP10.53□□□□□ -0.72
USP47-204ENST00000525078 TULP1O00294 542 aaPredicted RBP10.52□□□□□ -0.73
USP47-204ENST00000525078 VASPP50552 380 aaPredicted RBP10.51□□□□□ -0.73
USP47-204ENST00000525078 SP7Q8TDD2 431 aaPredicted RBP10.51□□□□□ -0.73
USP47-204ENST00000525078 ARXQ96QS3 562 aa10.51□□□□□ -0.73
USP47-204ENST00000525078 FBLN2P98095 1184 aa10.5□□□□□ -0.73
USP47-204ENST00000525078 OSCARQ8IYS5 282 aa10.49□□□□□ -0.73
USP47-204ENST00000525078 PAXIP1Q6ZW49 1069 aaPredicted RBP10.47□□□□□ -0.73
USP47-204ENST00000525078 PIP4P2Q8N4L2 257 aa10.46□□□□□ -0.73
USP47-204ENST00000525078 BBXQ8WY36 941 aaPredicted RBP10.46□□□□□ -0.73
USP47-204ENST00000525078 CFAP44Q96MT7 982 aa10.46□□□□□ -0.73
USP47-204ENST00000525078 PKD2Q13563 968 aa10.44□□□□□ -0.74
USP47-204ENST00000525078 IFNLR1Q8IU57 520 aaPredicted RBP10.43□□□□□ -0.74
USP47-204ENST00000525078 SPDYE4A6NLX3 237 aa10.42□□□□□ -0.74
USP47-204ENST00000525078 GTF3C3Q9Y5Q9 886 aa10.41□□□□□ -0.74
USP47-204ENST00000525078 PITPNM1O00562 1244 aa10.4□□□□□ -0.74
USP47-204ENST00000525078 ERICH6Q7L0X2 663 aa10.4□□□□□ -0.74
USP47-204ENST00000525078 FXR2P51116 673 aaKnown RBP eCLIP10.37□□□□□ -0.757e-6■■■■□ 23.7
USP47-204ENST00000525078 NBR1Q14596 966 aa10.35□□□□□ -0.75
USP47-204ENST00000525078 HAX1O00165 279 aa10.31□□□□□ -0.76
USP47-204ENST00000525078 SPRYD3Q8NCJ5 442 aa10.3□□□□□ -0.76
USP47-204ENST00000525078 ECM2O94769 699 aaPredicted RBP10.29□□□□□ -0.76
USP47-204ENST00000525078 NPM1P06748 294 aaKnown RBP eCLIP10.29□□□□□ -0.76
USP47-204ENST00000525078 TSHZ2Q9NRE2 1034 aa10.29□□□□□ -0.76
USP47-204ENST00000525078 HOMEZQ8IX15 550 aa10.28□□□□□ -0.76
USP47-204ENST00000525078 PROM2Q8N271 834 aa10.26□□□□□ -0.77
USP47-204ENST00000525078 SPDYE2BA6NHP3 402 aa10.25□□□□□ -0.77
USP47-204ENST00000525078 SPDYE6P0CI01 402 aa10.25□□□□□ -0.77
USP47-204ENST00000525078 SPDYE2Q495Y8 402 aa10.25□□□□□ -0.77
USP47-204ENST00000525078 EVX2Q03828 476 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms