RNA–Protein interactions for RNA: ENST00000515609.1

TPM3-222, Transcript of tropomyosin 3, humanhuman

TSL 3

Gene TPM3, Length 587 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-222ENST00000515609 NBR1Q14596 966 aa11□□□□□ -0.65
TPM3-222ENST00000515609 RBM26Q5T8P6 1007 aaKnown RBP11□□□□□ -0.65
TPM3-222ENST00000515609 APOBEC3FQ8IUX4 373 aaKnown RBP11□□□□□ -0.65
TPM3-222ENST00000515609 FBXO18Q8NFZ0 1043 aa11□□□□□ -0.65
TPM3-222ENST00000515609 ALG1Q9BT22 464 aa11□□□□□ -0.65
TPM3-222ENST00000515609 SH2D4AQ9H788 454 aa11□□□□□ -0.65
TPM3-222ENST00000515609 DDX4Q9NQI0 724 aaKnown RBP11□□□□□ -0.65
TPM3-222ENST00000515609 GPHNQ9NQX3 736 aaPredicted RBP11□□□□□ -0.65
TPM3-222ENST00000515609 FAM198AQ9UFP1 575 aa11□□□□□ -0.65
TPM3-222ENST00000515609 ZBTB12Q9Y330 459 aaPredicted RBP11□□□□□ -0.65
TPM3-222ENST00000515609 PPP2R3BQ9Y5P8 575 aa11□□□□□ -0.65
TPM3-222ENST00000515609 GJA3Q9Y6H8 435 aa11□□□□□ -0.65
TPM3-222ENST00000515609 ECM29Q5VYK3 1845 aa11□□□□□ -0.65
TPM3-222ENST00000515609 hCG_1984214I3L0E3 225 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 MPHOSPH10O00566 681 aaKnown RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 JAK2O60674 1132 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 CTDNEP1O95476 244 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 PARP1P09874 1014 aaKnown RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 NFIAQ12857 509 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 TRAF1Q13077 416 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 COL9A3Q14050 684 aaPredicted RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 SLC4A8Q2Y0W8 1093 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 ASPRV1Q53RT3 343 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 GPATCH4Q5T3I0 446 aaKnown RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 MCTP1Q6DN14 999 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 RCSD1Q6JBY9 416 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 TATDN1Q6P1N9 297 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 ZNF713Q8N859 430 aaPredicted RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 CCDC12Q8WUD4 166 aaPredicted RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 SYAP1Q96A49 352 aaPredicted RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 SLC26A6Q9BXS9 759 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 VEZTQ9HBM0 779 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 MTMR4Q9NYA4 1195 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 NYAP2Q9P242 653 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 CNOT7Q9UIV1 285 aaKnown RBP10.99□□□□□ -0.65
TPM3-222ENST00000515609 TACC3Q9Y6A5 838 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 CDK5RAP2Q96SN8 1893 aa10.99□□□□□ -0.65
TPM3-222ENST00000515609 GOLGA6L4A6NEF3 574 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 TCP10L2B9ZVM9 353 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 WNT10BO00744 389 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 SOCS7O14512 581 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 CALML3P27482 149 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 NOVP48745 357 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 GMPSP49915 693 aaPredicted RBP10.98□□□□□ -0.65
TPM3-222ENST00000515609 RASSF7Q02833 373 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 GRM4Q14833 912 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 NTRK3Q16288 839 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 ABCB5Q2M3G0 1257 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 DCAF15Q66K64 600 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 GALNT17Q6IS24 598 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 TMTC3Q6ZXV5 915 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 MICALL2Q8IY33 904 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 ZBED3Q96IU2 234 aaPredicted RBP10.98□□□□□ -0.65
TPM3-222ENST00000515609 TMEM47Q9BQJ4 181 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 XPO5Q9HAV4 1204 aaKnown RBP eCLIP10.98□□□□□ -0.65
TPM3-222ENST00000515609 SH3GLB2Q9NR46 395 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 IL17RBQ9NRM6 502 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 ZDHHC9Q9Y397 364 aa10.98□□□□□ -0.65
TPM3-222ENST00000515609 ZNF646O15015 1829 aaPredicted RBP10.98□□□□□ -0.65
TPM3-222ENST00000515609 CDC27P30260 824 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 SHMT1P34896 483 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 PKP1Q13835 747 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 KIF4BQ2VIQ3 1234 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 CCDC144CPQ8IYA2 1237 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 TMEM87AQ8NBN3 555 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 SLC44A5Q8NCS7 719 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 CCDC148Q8NFR7 591 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 CEP95Q96GE4 821 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 MYL10Q9BUA6 226 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 SPZ1Q9BXG8 430 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 ARHGEF10LQ9HCE6 1279 aa10.97□□□□□ -0.65
TPM3-222ENST00000515609 SEC63Q9UGP8 760 aaKnown RBP10.97□□□□□ -0.65
TPM3-222ENST00000515609 ELP1O95163 1332 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 CLRN2A0PK11 232 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 DDTLA6NHG4 134 aaPredicted RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 TRAK2O60296 914 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 NMT2O60551 498 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 ASNSP08243 561 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 FDPSP14324 419 aaKnown RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 RXRAP19793 462 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 CACNB3P54284 484 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 FOXD4L5Q5VV16 416 aaPredicted RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 CDC37L1Q7L3B6 337 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 TEX2Q8IWB9 1127 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 JMYQ8N9B5 988 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 FOXD4L4Q8WXT5 416 aaPredicted RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 MKL1Q969V6 931 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 RRP36Q96EU6 259 aaKnown RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 FOXP1Q9H334 677 aaPredicted RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 FAM217BQ9NTX9 383 aaPredicted RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 GPRC5DQ9NZD1 345 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 RNF181Q9P0P0 153 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 CLIP2Q9UDT6 1046 aa10.96□□□□□ -0.65
TPM3-222ENST00000515609 DDX49Q9Y6V7 483 aaKnown RBP10.96□□□□□ -0.65
TPM3-222ENST00000515609 COL4A5P29400 1685 aa10.95□□□□□ -0.66
TPM3-222ENST00000515609 PITPNM2Q9BZ72 1349 aa10.95□□□□□ -0.66
TPM3-222ENST00000515609 IGKV6D-41A0A0C4DH26 115 aa10.95□□□□□ -0.66
TPM3-222ENST00000515609 PALM3A6NDB9 673 aaPredicted RBP10.95□□□□□ -0.66
TPM3-222ENST00000515609 DCAF8L1A6NGE4 600 aa10.95□□□□□ -0.66
TPM3-222ENST00000515609 KLRF2D3W0D1 207 aa10.95□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 24.8 ms