RNA–Protein interactions for RNA: ENST00000493919.5

BRCA1-222, Transcript of BRCA1, DNA repair associated, human

TSL 2

Gene BRCA1, Length 1,948 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-222	ENST00000493919	ZBED3	Q96IU2	234 aa	Predicted RBP	13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	TDRD3	Q9H7E2	651 aa	Known RBP	13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	RMI1	Q9H9A7	625 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	PAG1	Q9NWQ8	432 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	POLR2A	P24928	1970 aa	Known RBP	13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	FMR1	Q06787	632 aa	Known RBP eCLIP	13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	MFSD4B	Q5TF39	518 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	HHIPL2	Q6UWX4	724 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	DLK2	Q6UY11	383 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	CDC37L1	Q7L3B6	337 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	USP48	Q86UV5	1035 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	SLF2	Q8IX21	1173 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	ANKRD7	Q92527	254 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	NSUN4	Q96CB9	384 aa	Known RBP	13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	ZDHHC15	Q96MV8	337 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	ZNF408	Q9H9D4	720 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	JADE2	Q9NQC1	790 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	TOMM22	Q9NS69	142 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	PCDHGA4	Q9Y5G9	962 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	MROH7-TTC4	A0A0A0MT08	1334 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	TTC41P	Q6P2S7	1318 aa		13.37	□□□□□ -0.27
BRCA1-222	ENST00000493919	SPDYE4	A6NLX3	237 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	ERC2	O15083	957 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	MAP4K4	O95819	1239 aa	Predicted RBP	13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	COPB2	P35606	906 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	CACNB3	P54284	484 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	TTF1	Q15361	905 aa	Predicted RBP	13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	PDCD2	Q16342	344 aa	Predicted RBP	13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	GJC2	Q5T442	439 aa	Predicted RBP	13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	NAA16	Q6N069	864 aa	Predicted RBP	13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	APOBEC3F	Q8IUX4	373 aa	Known RBP	13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	HAUS7	Q99871	368 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	GOPC	Q9HD26	462 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	TMOD2	Q9NZR1	351 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	PGAP2	Q9UHJ9	254 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	PNMA2	Q9UL42	364 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	PITPNM2	Q9BZ72	1349 aa		13.36	□□□□□ -0.27
BRCA1-222	ENST00000493919	FLT3	P36888	993 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	GSTO1	P78417	241 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	MAP3K12	Q12852	859 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	IFT88	Q13099	833 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	SPDYE2	Q495Y8	402 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	APOBEC3H	Q6NTF7	200 aa	Known RBP	13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	MAGEB6	Q8N7X4	407 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	MORC4	Q8TE76	937 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	ZNF384	Q8TF68	577 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	ZNF70	Q9UC06	446 aa	Predicted RBP	13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	MORC2	Q9Y6X9	1032 aa	Predicted RBP	13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	TCP10L2	B9ZVM9	353 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	GLRX3	O76003	335 aa	Known RBP	13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	ITGBL1	O95965	494 aa	Predicted RBP	13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	BTD	P43251	543 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	RWDD2B	P57060	319 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	MCTP2	Q6DN12	878 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	PI4K2B	Q8TCG2	481 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	FAM212A	Q96EL1	285 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	KIF2C	Q99661	725 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	SLX1A	Q9BQ83	275 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	IQCG	Q9H095	443 aa	Known RBP	13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	GAK	O14976	1311 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	SALL3	Q9BXA9	1300 aa		13.35	□□□□□ -0.27
BRCA1-222	ENST00000493919	CYP7A1	P22680	504 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	PDE1A	P54750	535 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	MCM6	Q14566	821 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	SYCP1	Q15431	976 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	PRAMEF18	Q5VWM3	479 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	FMNL3	Q8IVF7	1028 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	DRC1	Q96MC2	740 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	ZKSCAN5	Q9Y2L8	839 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	PCNT	O95613	3336 aa		13.34	□□□□□ -0.27
BRCA1-222	ENST00000493919	PASK	Q96RG2	1323 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	TMCO5B	A8MYB1	307 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	LDHC	P07864	332 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	RABEP1	Q15276	862 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	MRI	Q9BWK5	157 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	AATF	Q9NY61	560 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	MYH7	P12883	1935 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	TRPM7	Q96QT4	1865 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	TNFAIP1	Q13829	316 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	SLC9C2	Q5TAH2	1124 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	CDC42EP5	Q6NZY7	148 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	CENPQ	Q7L2Z9	268 aa	Predicted RBP	13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	ADGRA1	Q86SQ6	560 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	MIGA1	Q8NAN2	632 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	CDCA5	Q96FF9	252 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	POLR3C	Q9BUI4	534 aa	Predicted RBP	13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	DDX24	Q9GZR7	859 aa	Known RBP eCLIP	13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	DEFB129	Q9H1M3	183 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	USP40	Q9NVE5	1235 aa		13.33	□□□□□ -0.28
BRCA1-222	ENST00000493919	CELF2	O95319	508 aa	Known RBP	13.32	□□□□□ -0.28
BRCA1-222	ENST00000493919	PDE6A	P16499	860 aa		13.32	□□□□□ -0.28
BRCA1-222	ENST00000493919	APLP1	P51693	650 aa		13.32	□□□□□ -0.28
BRCA1-222	ENST00000493919	HNRNPH2	P55795	449 aa	Known RBP	13.32	□□□□□ -0.28
BRCA1-222	ENST00000493919	NOLC1	Q14978	699 aa	Known RBP eCLIP	13.32	□□□□□ -0.28
BRCA1-222	ENST00000493919	C17orf50	Q8WW18	174 aa		13.32	□□□□□ -0.28
BRCA1-222	ENST00000493919	SH3GL3	Q99963	347 aa		13.32	□□□□□ -0.28
BRCA1-222	ENST00000493919	ZNF532	Q9HCE3	1301 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	IMPDH2	P12268	514 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	HSPA6	P17066	643 aa		13.31	□□□□□ -0.28
BRCA1-222	ENST00000493919	CYP2C19	P33261	490 aa		13.31	□□□□□ -0.28

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