RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 TCEAL9Q9UHQ7 104 aa12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 THRAP3Q9Y2W1 955 aaKnown RBP12.17□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CBFA2T2O43439 604 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SLFN14P0C7P3 912 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CASP1P29466 404 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 KIF5BP33176 963 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 UBA7P41226 1012 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SMC1AQ14683 1233 aaKnown RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZNF274Q96GC6 653 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 FNBP4Q8N3X1 1017 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SH3RF3Q8TEJ3 882 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 BSDC1Q9NW68 430 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TMOD2Q9NZR1 351 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 NRBP1Q9UHY1 535 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CLRN2A0PK11 232 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZNF76P36508 570 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ST3GAL1Q11201 340 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ARHGAP30Q7Z6I6 1101 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ADGRA1Q86SQ6 560 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CCDC150Q8NCX0 1101 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZNF526Q8TF50 670 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ZSCAN10Q96SZ4 725 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 BLZF1Q9H2G9 400 aa12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 EPB41L4AQ9HCS5 686 aaPredicted RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 RRP15Q9Y3B9 282 aaKnown RBP12.16□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TXNRD1Q16881 649 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CLEC17AQ6ZS10 378 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SPICE1Q8N0Z3 855 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ANKRD7Q92527 254 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CARD6Q9BX69 1037 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TANGO6Q9C0B7 1094 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 USP40Q9NVE5 1235 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PKD2L1Q9P0L9 805 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 IFNKQ9P0W0 207 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CHRNA5P30532 468 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 FAM160A1Q05DH4 1040 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 GBP6Q6ZN66 633 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TMTC2Q8N394 836 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 ATF5Q9Y2D1 282 aaPredicted RBP12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 RPAP1Q9BWH6 1393 aaPredicted RBP12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 CTAGE5O15320 804 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 SLURP2P0DP57 97 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 TOP1P11387 765 aaKnown RBP12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 EN1Q05925 392 aaPredicted RBP12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 PNMA1Q8ND90 353 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 WDR66Q8TBY9 1149 aa12.15□□□□□ -0.46
MSH5-SAPCD1-207ENST00000493662 RAD17O75943 681 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 NF2P35240 595 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DDIT3P35638 169 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SLC16A2P36021 539 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ANTXR2P58335 489 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 USP17L2Q6R6M4 530 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 OXER1Q8TDS5 423 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CCDC12Q8WUD4 166 aaPredicted RBP12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SMARCE1Q969G3 411 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ZNF287Q9HBT7 754 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GJA3Q9Y6H8 435 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FAM205CA6NFA0 338 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PFKFB1P16118 471 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SNAP25P60880 206 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 USH1GQ495M9 461 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 LLPHQ9BRT6 129 aaKnown RBP12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 USP42Q9H9J4 1324 aaKnown RBP12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 MED23Q9ULK4 1368 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SH2B2O14492 632 aaPredicted RBP12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GSTO1P78417 241 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KMT5BQ4FZB7 885 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 C2CD5Q86YS7 1000 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 EYA3Q99504 573 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 PLCD4Q9BRC7 762 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FEZ2Q9UHY8 353 aaPredicted RBP12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FBXO3Q9UK99 471 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KCNH3Q9ULD8 1083 aa12.14□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KIF28PB7ZC32 967 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 HLA-DOAP06340 250 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 KRT2P35908 639 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GOLGA8FQ08AF8 430 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GOLGA8DPQ0D2H9 430 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RESTQ13127 1097 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 RNF187Q5TA31 235 aaPredicted RBP12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 ST7Q9NRC1 585 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CDHR2Q9BYE9 1310 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 LTN1O94822 1766 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 H0YIN7 160 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CTDNEP1O95476 244 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 NAP1L1P55209 391 aaKnown RBP12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 FCHSD1Q86WN1 690 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 MB21D2Q8IYB1 491 aaPredicted RBP12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 SMYD4Q8IYR2 804 aaPredicted RBP12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CCDC43Q96MW1 224 aaKnown RBP12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TCP10L2B9ZVM9 353 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DEXIO95424 95 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 DNA2P51530 1060 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 GPSM2P81274 684 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 VPS72Q15906 364 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CCDC178Q5BJE1 867 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 CLEC4GQ6UXB4 293 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 C11orf57Q6ZUT1 292 aaPredicted RBP12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 NBPF11Q86T75 865 aa12.13□□□□□ -0.47
MSH5-SAPCD1-207ENST00000493662 TICAM2Q86XR7 235 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 189.7 ms