RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	BAHD1	Q8TBE0	780 aa	Predicted RBP	5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	PMFBP1	Q8TBY8	1022 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	GATA6	Q92908	595 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	DHRS1	Q96LJ7	313 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	TRIM55	Q9BYV6	548 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	OSBPL2	Q9H1P3	480 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	PHAX	Q9H814	394 aa	Known RBP	5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	PRDM10	Q9NQV6	1147 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	STOML1	Q9UBI4	398 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	MSRB2	Q9Y3D2	182 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	LTBP3	Q9NS15	1303 aa		5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	COL17A1	Q9UMD9	1497 aa	Predicted RBP	5.89	□□□□□ -1.47
PTCD3-209	ENST00000472044	U2SURP	O15042	1029 aa	Known RBP	5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	SLITRK5	O94991	958 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	H2AFB1	P0C5Y9	115 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	H2AFB2	P0C5Z0	115 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	CCDC144B	Q3MJ40	725 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	LETMD1	Q6P1Q0	360 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	ZAR1	Q86SH2	424 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	CELF2-AS1	Q8N7Q2	184 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	VWCE	Q96DN2	955 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	DUSP23	Q9BVJ7	150 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	C7orf69	Q9H7B7	122 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	TPSG1	Q9NRR2	321 aa		5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	ZNF214	Q9UL59	606 aa	Predicted RBP	5.88	□□□□□ -1.47
PTCD3-209	ENST00000472044	HMX2	A2RU54	273 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	EOMES	O95936	686 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	POLR2B	P30876	1174 aa	Known RBP	5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	PMS1	P54277	932 aa	Known RBP	5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	CDK5R2	Q13319	367 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	NFE2L2	Q16236	605 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	DDR2	Q16832	855 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	BBS9	Q3SYG4	887 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	ZNF746	Q6NUN9	644 aa	Predicted RBP	5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	OGFOD3	Q6PK18	319 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	FAM214B	Q7L5A3	538 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	TMEM192	Q8IY95	271 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	RIN3	Q8TB24	985 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	COX4I2	Q96KJ9	171 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	MIPEP	Q99797	713 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	CCDC113	Q9H0I3	377 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	LGR6	Q9HBX8	967 aa		5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	SUCO	Q9UBS9	1254 aa	Known RBP	5.87	□□□□□ -1.47
PTCD3-209	ENST00000472044	CLEC3A	O75596	197 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	ETV3	P41162	512 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	RNF43	Q68DV7	783 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	NOP9	Q86U38	636 aa	Known RBP	5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	SLC51A	Q86UW1	340 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	MICAL1	Q8TDZ2	1067 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	XAGE3	Q8WTP9	111 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	SMARCC1	Q92922	1105 aa	Predicted RBP	5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	FBXL18	Q96ME1	805 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044	SLC6A18	Q96N87	628 aa		5.86	□□□□□ -1.47
PTCD3-209	ENST00000472044		K7ELQ4	463 aa	Predicted RBP	5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	GSC2	O15499	205 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	PROC	P04070	461 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	CYP7A1	P22680	504 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	ADM	P35318	185 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	CYP27A1	Q02318	531 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	RASA3	Q14644	834 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	NCAPH	Q15003	741 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	ANKRD39	Q53RE8	183 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	NBPF12	Q5TAG4	269 aa	Predicted RBP	5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	LARP1B	Q659C4	914 aa	Known RBP	5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	VHLL	Q6RSH7	139 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	CDH24	Q86UP0	819 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	FAM178B	Q8IXR5	827 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	TOP6BL	Q8N6T0	577 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	RNF141	Q8WVD5	230 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	KLHL6	Q8WZ60	621 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	KREMEN1	Q96MU8	473 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	TBC1D32	Q96NH3	1257 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	ZSWIM4	Q9H7M6	989 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	CDK11A	Q9UQ88	783 aa	Predicted RBP	5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	MAPK8IP1	Q9UQF2	711 aa		5.85	□□□□□ -1.47
PTCD3-209	ENST00000472044	IGF2BP3	O00425	579 aa	Known RBP eCLIP	5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	LEFTY1	O75610	366 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	GJB6	O95452	261 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	FAM87A	P0C7U9	286 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	ZNF143	P52747	638 aa	Predicted RBP	5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	RNF4	P78317	190 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	SLC7A5	Q01650	507 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	NFIA	Q12857	509 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	RASGRF1	Q13972	1273 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	CYP27C1	Q4G0S4	372 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	NKAPL	Q5M9Q1	402 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	C6orf15	Q6UXA7	325 aa	Predicted RBP	5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	C22orf34	Q6ZV56	151 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	PPFIBP1	Q86W92	1011 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	DBNDD2	Q9BQY9	259 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	ASPN	Q9BXN1	380 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	ST7	Q9NRC1	585 aa		5.84	□□□□□ -1.47
PTCD3-209	ENST00000472044	LOC100996750	A0A140TA64	210 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044		C9IYK1	514 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	PDPK1	O15530	556 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	DDAH1	O94760	285 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	KIR3DL1	P43629	444 aa		5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	CPSF6	Q16630	551 aa	Known RBP eCLIP	5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	RSPO4	Q2I0M5	234 aa	Predicted RBP	5.83	□□□□□ -1.48
PTCD3-209	ENST00000472044	GNPTAB	Q3T906	1256 aa		5.83	□□□□□ -1.48

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