RNA–Protein interactions for RNA: ENST00000461798.5

BRCA1-207, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 3

Gene BRCA1, Length 582 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-207ENST00000461798 TMOD4Q9NZQ9 345 aa11.09□□□□□ -0.63
BRCA1-207ENST00000461798 SIPA1L1O43166 1804 aa11.09□□□□□ -0.63
BRCA1-207ENST00000461798 PTPRFP10586 1907 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 ADCY3O60266 1144 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 GH2P01242 217 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 SHMT1P34896 483 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 UBXN2AP68543 259 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 UBE3CQ15386 1083 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 CERKLQ49MI3 558 aaPredicted RBP11.08□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L2Q6R6M4 530 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 NKX2-3Q8TAU0 364 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 COA7Q96BR5 231 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 EDC3Q96F86 508 aaKnown RBP11.08□□□□□ -0.64
BRCA1-207ENST00000461798 DCP1AQ9NPI6 582 aaPredicted RBP11.08□□□□□ -0.64
BRCA1-207ENST00000461798 GJD2Q9UKL4 321 aa11.08□□□□□ -0.64
BRCA1-207ENST00000461798 MYO5AQ9Y4I1 1855 aaKnown RBP11.08□□□□□ -0.64
BRCA1-207ENST00000461798 RBBP6Q7Z6E9 1792 aaKnown RBP11.08□□□□□ -0.64
BRCA1-207ENST00000461798 POLR3DP05423 398 aaPredicted RBP11.07□□□□□ -0.64
BRCA1-207ENST00000461798 CCL5P13501 91 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 GJA8P48165 433 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 HERVK_113P62684 666 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 IRX3P78415 501 aaPredicted RBP11.07□□□□□ -0.64
BRCA1-207ENST00000461798 ABCB5Q2M3G0 1257 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 LCORLQ8N3X6 602 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 GTF3C2Q8WUA4 911 aaPredicted RBP11.07□□□□□ -0.64
BRCA1-207ENST00000461798 DDX24Q9GZR7 859 aaKnown RBP eCLIP11.07□□□□□ -0.64
BRCA1-207ENST00000461798 KIAA1683Q9H0B3 1180 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 CABP5Q9NP86 173 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 ATP8A2Q9NTI2 1148 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 MCM9Q9NXL9 1143 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 RBPJLQ9UBG7 517 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 ZSWIM8A7E2V4 1837 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 FOCADQ5VW36 1801 aa11.07□□□□□ -0.64
BRCA1-207ENST00000461798 SMARCA5O60264 1052 aaPredicted RBP11.06□□□□□ -0.64
BRCA1-207ENST00000461798 SLC34A2O95436 690 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 MYCP01106 439 aaPredicted RBP11.06□□□□□ -0.64
BRCA1-207ENST00000461798 GUCY1A2P33402 732 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 USP14P54578 494 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 ZSCAN25Q6NSZ9 544 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 UBE2Q1Q7Z7E8 422 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 GPRC5AQ8NFJ5 357 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 SDR42E1Q8WUS8 393 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 SHISA4Q96DD7 197 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 ARMT1Q9H993 441 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 ECHDC1Q9NTX5 307 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 BIN2Q9UBW5 565 aaPredicted RBP11.06□□□□□ -0.64
BRCA1-207ENST00000461798 SWAP70Q9UH65 585 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 CDK5RAP2Q96SN8 1893 aa11.06□□□□□ -0.64
BRCA1-207ENST00000461798 LOC285556D6RIA3 1793 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L15C9J2P7 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L13C9JLJ4 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L11C9JVI0 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L18D6R9N7 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L22D6RA61 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L17D6RBQ6 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L19D6RCP7 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L20D6RJB6 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 USP17L24Q0WX57 530 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 RAB3GAP1Q15042 981 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 POTEEQ6S8J3 1075 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 LBX2Q6XYB7 198 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 CATSPERGQ6ZRH7 1159 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 ACER1Q8TDN7 264 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 RNF208Q9H0X6 261 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 TXNRD2Q9NNW7 524 aa11.05□□□□□ -0.64
BRCA1-207ENST00000461798 PRKAB2O43741 272 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 MBD4O95243 580 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 SGPL1O95470 568 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 INHAP05111 366 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 XRCC5P13010 732 aaKnown RBP11.04□□□□□ -0.64
BRCA1-207ENST00000461798 ELNP15502 786 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 MAPK4P31152 587 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 Q3C1V9 767 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 SLFNL1Q499Z3 407 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 C12orf60Q5U649 245 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 U2AF1L4Q8WU68 220 aaKnown RBP11.04□□□□□ -0.64
BRCA1-207ENST00000461798 GCC1Q96CN9 775 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 BCL11AQ9H165 835 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 UNC93B1Q9H1C4 597 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 PAK6Q9NQU5 681 aaPredicted RBP11.04□□□□□ -0.64
BRCA1-207ENST00000461798 RABGAP1Q9Y3P9 1069 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 PCDHB15Q9Y5E8 787 aa11.04□□□□□ -0.64
BRCA1-207ENST00000461798 ATAD5Q96QE3 1844 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 CHGBP05060 677 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 CYP2D6P10635 497 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 ERVK-9P63128 1117 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 ERVK-24P63145 666 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 SEPT2Q15019 361 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 TMEM179Q6ZVK1 233 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 SIAH1Q8IUQ4 282 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 KBTBD3Q8NAB2 608 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 USP6NLQ92738 828 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 CCDC17Q96LX7 622 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 FEZ1Q99689 392 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 CRISPLD2Q9H0B8 497 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 PUS7LQ9H0K6 701 aaKnown RBP11.03□□□□□ -0.64
BRCA1-207ENST00000461798 MYH1P12882 1939 aa11.03□□□□□ -0.64
BRCA1-207ENST00000461798 A0A1W2PRG0 241 aa11.02□□□□□ -0.65
BRCA1-207ENST00000461798 USP17L12C9JPN9 530 aa11.02□□□□□ -0.65
BRCA1-207ENST00000461798 USP17L21D6R901 530 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms