RNA–Protein interactions for RNA: ENST00000442151.6

CD44-211, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best)

Gene CD44, Length 1,825 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-211ENST00000442151 MAGEB6P1A0A0J9YX57 407 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 POLR3DP05423 398 aaPredicted RBP9.42□□□□□ -0.9
CD44-211ENST00000442151 NUDT7P0C024 238 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 PDE3AQ14432 1141 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 MAGEB6Q8N7X4 407 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 ZNF384Q8TF68 577 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 ARHGAP39Q9C0H5 1083 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 RNF208Q9H0X6 261 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 EHD4Q9H223 541 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 CWC22Q9HCG8 908 aaKnown RBP9.42□□□□□ -0.9
CD44-211ENST00000442151 SERPINB13Q9UIV8 391 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 RCAN3Q9UKA8 241 aa9.42□□□□□ -0.9
CD44-211ENST00000442151 RLBP1P12271 317 aa9.41□□□□□ -0.9
CD44-211ENST00000442151 CCL5P13501 91 aa9.41□□□□□ -0.9
CD44-211ENST00000442151 GJA8P48165 433 aa9.41□□□□□ -0.9
CD44-211ENST00000442151 CCNA1P78396 465 aa9.41□□□□□ -0.9
CD44-211ENST00000442151 LRRFIP1Q32MZ4 808 aaKnown RBP9.41□□□□□ -0.9
CD44-211ENST00000442151 PIH1D3Q9NQM4 214 aaKnown RBP9.41□□□□□ -0.9
CD44-211ENST00000442151 EXOC6BQ9Y2D4 811 aa9.41□□□□□ -0.9
CD44-211ENST00000442151 TFRCP02786 760 aaKnown RBP9.4□□□□□ -0.9
CD44-211ENST00000442151 MAPK4P31152 587 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 FLT3LGP49771 235 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 HMGCS2P54868 508 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 PRKCZQ05513 592 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 CERKLQ49MI3 558 aaPredicted RBP9.4□□□□□ -0.9
CD44-211ENST00000442151 ANKRD13CQ8N6S4 541 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 EFCAB3Q8N7B9 438 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 GPRC5AQ8NFJ5 357 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 PANK1Q8TE04 598 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 GPATCH3Q96I76 525 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 ASCC2Q9H1I8 757 aaPredicted RBP9.4□□□□□ -0.9
CD44-211ENST00000442151 MORF4L1Q9UBU8 362 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP9.4□□□□□ -0.9
CD44-211ENST00000442151 DOCK1Q14185 1865 aa9.4□□□□□ -0.9
CD44-211ENST00000442151 USP17L15C9J2P7 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L13C9JLJ4 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L11C9JVI0 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L18D6R9N7 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L22D6RA61 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L17D6RBQ6 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L19D6RCP7 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L20D6RJB6 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 SGPL1O95470 568 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 USP17L24Q0WX57 530 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 SLC9C2Q5TAH2 1124 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 SOCS4Q8WXH5 440 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 DPF3Q92784 378 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 ZBTB40Q9NUA8 1239 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 PALD1Q9ULE6 856 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 ZBTB21Q9ULJ3 1066 aa9.4□□□□□ -0.91
CD44-211ENST00000442151 RBBP6Q7Z6E9 1792 aaKnown RBP9.39□□□□□ -0.91
CD44-211ENST00000442151 ABCB5Q2M3G0 1257 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 TATDN1Q6P1N9 297 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 ANKLE1Q8NAG6 615 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 FEZ1Q99689 392 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 NUDT12Q9BQG2 462 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 SH2D4AQ9H788 454 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 ATP8A2Q9NTI2 1148 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 SWAP70Q9UH65 585 aa9.39□□□□□ -0.91
CD44-211ENST00000442151 SAP30BPQ9UHR5 308 aaKnown RBP9.39□□□□□ -0.91
CD44-211ENST00000442151 FAM196BA6NMK8 535 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 MYCP01106 439 aaPredicted RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 XRCC5P13010 732 aaKnown RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 ATP5JP18859 108 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 DYNLL1P63167 89 aaKnown RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 MTMR2Q13614 643 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 TREML2Q5T2D2 321 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 MIGA1Q8NAN2 632 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 C12orf42Q96LP6 360 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 CCDC17Q96LX7 622 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 HMX1Q9NP08 348 aaPredicted RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 IL1RAPL2Q9NP60 686 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 HOXC10Q9NYD6 342 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 COG6Q9Y2V7 657 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 RABGAP1Q9Y3P9 1069 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 TNRC18O15417 2968 aaPredicted RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 ECM2O94769 699 aaPredicted RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 HMGCRP04035 888 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 INHAP05111 366 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 HERVK_113P62684 666 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 CAP1Q01518 475 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 LAPTM4AQ15012 233 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 U2AF1L4Q8WU68 220 aaKnown RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 DNAJC2Q99543 621 aaKnown RBP9.38□□□□□ -0.91
CD44-211ENST00000442151 LRRCC1Q9C099 1032 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 GABRQQ9UN88 632 aa9.38□□□□□ -0.91
CD44-211ENST00000442151 MAST2Q6P0Q8 1798 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 RPTORQ8N122 1335 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 GOLIM4O00461 696 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 FARP2O94887 1054 aaPredicted RBP9.37□□□□□ -0.91
CD44-211ENST00000442151 GH2P01242 217 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 PDE6AP16499 860 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 CTGFP29279 349 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 RGS2P41220 211 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 RAB3GAP1Q15042 981 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 MTFR1Q15390 333 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 P2RX7Q99572 595 aaKnown RBP9.37□□□□□ -0.91
CD44-211ENST00000442151 KIAA1683Q9H0B3 1180 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 PAG1Q9NWQ8 432 aa9.37□□□□□ -0.91
CD44-211ENST00000442151 MCM9Q9NXL9 1143 aa9.37□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms