RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 ISM2Q6H9L7 571 aa15.59■□□□□ 0.09
COL6A3-207ENST00000433762 IQCA1Q86XH1 822 aa15.59■□□□□ 0.09
COL6A3-207ENST00000433762 SMARCC1Q92922 1105 aaPredicted RBP15.59■□□□□ 0.09
COL6A3-207ENST00000433762 SPATA31A6Q5VVP1 1343 aa15.59■□□□□ 0.09
COL6A3-207ENST00000433762 EFCAB8A8MWE9 144 aa15.58■□□□□ 0.09
COL6A3-207ENST00000433762 NR1I3Q14994 352 aa15.58■□□□□ 0.09
COL6A3-207ENST00000433762 BSDC1Q9NW68 430 aaPredicted RBP15.58■□□□□ 0.09
COL6A3-207ENST00000433762 RAI14Q9P0K7 980 aa15.58■□□□□ 0.09
COL6A3-207ENST00000433762 IQSEC3Q9UPP2 1182 aaPredicted RBP15.58■□□□□ 0.09
COL6A3-207ENST00000433762 PPP2R2CQ9Y2T4 447 aa15.58■□□□□ 0.09
COL6A3-207ENST00000433762 LOC102724428A0A0B4J2F2 783 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 SPDYE4A6NLX3 237 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 UBE2Q2LH0YL09 131 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 ATP8B1O43520 1251 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 SIK1P57059 783 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 SEMA3FQ13275 785 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 NR5A1Q13285 461 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 SPATA1Q5VX52 437 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 ENAHQ8N8S7 591 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-207ENST00000433762 TC2NQ8N9U0 490 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 SYTL4Q96C24 671 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-207ENST00000433762 CSRNP2Q9H175 543 aa15.58■□□□□ 0.08
COL6A3-207ENST00000433762 ARGLU1Q9NWB6 273 aaPredicted RBP15.58■□□□□ 0.08
COL6A3-207ENST00000433762 NIP7Q9Y221 180 aaKnown RBP eCLIP15.58■□□□□ 0.08
COL6A3-207ENST00000433762 COL24A1Q17RW2 1714 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 CDK11BP21127 795 aaKnown RBP15.57■□□□□ 0.08
COL6A3-207ENST00000433762 ATP6V1AP38606 617 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 FMR1Q06787 632 aaKnown RBP eCLIP15.57■□□□□ 0.08
COL6A3-207ENST00000433762 BMS1Q14692 1282 aaKnown RBP15.57■□□□□ 0.08
COL6A3-207ENST00000433762 FAM177A1Q8N128 213 aaPredicted RBP15.57■□□□□ 0.08
COL6A3-207ENST00000433762 TNFRSF25Q93038 417 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 CABP5Q9NP86 173 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 COL1A1P02452 1464 aaPredicted RBP15.57■□□□□ 0.08
COL6A3-207ENST00000433762 TMEM232C9JQI7 657 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 FOXN1O15353 648 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 GRIN1Q05586 938 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 CAVIN4Q5BKX8 364 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 IFIT1BQ5T764 474 aaKnown RBP15.57■□□□□ 0.08
COL6A3-207ENST00000433762 ANKRD18AQ8IVF6 992 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 NUP133Q8WUM0 1156 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 CCDC51Q96ER9 411 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 C8orf37Q96NL8 207 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 ZKSCAN3Q9BRR0 538 aa15.57■□□□□ 0.08
COL6A3-207ENST00000433762 DDX52Q9Y2R4 599 aaKnown RBP eCLIP15.57■□□□□ 0.08
COL6A3-207ENST00000433762 ITIH6Q6UXX5 1313 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 VWA3AA6NCI4 1184 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 PRR29P0C7W0 189 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 TROAPQ12815 778 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 CDKAL1Q5VV42 579 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 TMTC3Q6ZXV5 915 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 MIGA1Q8NAN2 632 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 OXER1Q8TDS5 423 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 NGLY1Q96IV0 654 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 SPATA31A1Q5TZJ5 1347 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 FECHP22830 423 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 ATP2C1P98194 919 aaPredicted RBP15.56■□□□□ 0.08
COL6A3-207ENST00000433762 CUL4BQ13620 913 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 TUBB2AQ13885 445 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 SLC10A5Q5PT55 438 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 TUBB2BQ9BVA1 445 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 PARP3Q9Y6F1 533 aa15.56■□□□□ 0.08
COL6A3-207ENST00000433762 TADA3O75528 432 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 TUBB4BP68371 445 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 DPYDQ12882 1025 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 SBK1Q52WX2 424 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 ADGRA1Q86SQ6 560 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 UBXN4Q92575 508 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 CNTNAP5Q8WYK1 1306 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 GTF2E1P29083 439 aaPredicted RBP15.55■□□□□ 0.08
COL6A3-207ENST00000433762 PBX1P40424 430 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 DDB1Q16531 1140 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 APTXQ7Z2E3 356 aaKnown RBP15.55■□□□□ 0.08
COL6A3-207ENST00000433762 MNS1Q8NEH6 495 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 PRDM10Q9NQV6 1147 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 ATP8A2Q9NTI2 1148 aa15.55■□□□□ 0.08
COL6A3-207ENST00000433762 SYNRGQ9UMZ2 1314 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 MINDY4BA8MYZ0 360 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 SNAP23O00161 211 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 MAP3K9P80192 1104 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 ERCC6LQ2NKX8 1250 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 SPECC1Q5M775 1068 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 ARL6IP4Q66PJ3 421 aaKnown RBP15.54■□□□□ 0.08
COL6A3-207ENST00000433762 FBXO33Q7Z6M2 555 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 PAGE5Q96GU1 130 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 MED15Q96RN5 788 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 COL4A1P02462 1669 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 AKR1B15C9JRZ8 316 aaPredicted RBP15.54■□□□□ 0.08
COL6A3-207ENST00000433762 SPAG1Q07617 926 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 SDR42E1Q8WUS8 393 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 SHISA4Q96DD7 197 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 SH3GLB2Q9NR46 395 aa15.54■□□□□ 0.08
COL6A3-207ENST00000433762 ITPK1Q13572 414 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 NPY5RQ15761 445 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 FILIP1LQ4L180 1135 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 TTC38Q5R3I4 469 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 VPS54Q9P1Q0 977 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 ARPP21Q9UBL0 812 aaPredicted RBP15.53■□□□□ 0.08
COL6A3-207ENST00000433762 ADD3Q9UEY8 706 aaKnown RBP15.53■□□□□ 0.08
COL6A3-207ENST00000433762 LRRC10BA6NIK2 292 aa15.53■□□□□ 0.08
COL6A3-207ENST00000433762 CCDC175P0C221 793 aa15.53■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms