RNA–Protein interactions for RNA: ENST00000419110.5

HMGB3-202, Transcript of high mobility group box 3, humanhuman

APPRIS ALT2 TSL 3

Gene HMGB3, Length 707 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3-202ENST00000419110 PTPDC1A2A3K4 754 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 VPS37CA5D8V6 355 aaPredicted RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 PRDM1O75626 825 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 WDHD1O75717 1129 aaPredicted RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 DDAH1O94760 285 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 VIL1P09327 827 aaKnown RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 TSPY3P0CV98 308 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 TSPY8P0CW00 308 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 CALM1P0DP23 149 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 CALM2P0DP24 149 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 CALM3P0DP25 149 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 LMNB1P20700 586 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 GJB2P29033 226 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 EVCP57679 992 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 ST3GAL1Q11201 340 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 TNFAIP1Q13829 316 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 DLGAP5Q15398 846 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 RTN1Q16799 776 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 PPP4R3BQ5MIZ7 849 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 IFIT1BQ5T764 474 aaKnown RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 CDC42EP5Q6NZY7 148 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 ZNF654Q8IZM8 581 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 CRACR2BQ8N4Y2 399 aaPredicted RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 NECAB1Q8N987 351 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 ZSCAN10Q96SZ4 725 aaPredicted RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 LARP6Q9BRS8 491 aaKnown RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 MRIQ9BWK5 157 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 EHD4Q9H223 541 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 DHX36Q9H2U1 1008 aaKnown RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 LY9Q9HBG7 655 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 MKRN1Q9UHC7 482 aaKnown RBP6.97□□□□□ -1.29
HMGB3-202ENST00000419110 PTPRFP10586 1907 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 STK36Q9NRP7 1315 aa6.97□□□□□ -1.29
HMGB3-202ENST00000419110 CCDC196A0A1B0GTZ2 297 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 ENTPD3O75355 529 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 FGRP09769 529 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 FOXK1P85037 733 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 CXCL9Q07325 125 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 SCRN1Q12765 414 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 COL9A3Q14050 684 aaPredicted RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 APOBEC3HQ6NTF7 200 aaKnown RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 ILDR2Q71H61 639 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 CATIPQ7Z7H3 387 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 ZSCAN29Q8IWY8 852 aaPredicted RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 TRIM22Q8IYM9 498 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 TMTC2Q8N394 836 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 ENAHQ8N8S7 591 aaPredicted RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 NSUN7Q8NE18 718 aaKnown RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 IDI2Q9BXS1 227 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 RBM28Q9NW13 759 aaKnown RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 SERPINB13Q9UIV8 391 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 ATP6V1DQ9Y5K8 247 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 POLR2AP24928 1970 aaKnown RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 ZNF541Q9H0D2 1346 aa6.96□□□□□ -1.3
HMGB3-202ENST00000419110 ZC3H4Q9UPT8 1303 aaKnown RBP6.96□□□□□ -1.3
HMGB3-202ENST00000419110 BAZ2BQ9UIF8 2168 aaKnown RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 PHIPQ8WWQ0 1821 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 H3BQV1 296 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 STX6O43752 255 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 BRD1O95696 1058 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 RASA1P20936 1047 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 PDIA3P30101 505 aaKnown RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 KIF5BP33176 963 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 PBX2P40425 430 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 TNNI2P48788 182 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 CCT2P78371 535 aaKnown RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 LSM11P83369 360 aaKnown RBP eCLIP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 NFIAQ12857 509 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 IFFO2Q5TF58 517 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 FKBP1CQ5VVH2 108 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 ZNF444Q8N0Y2 327 aaPredicted RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 MTMR14Q8NCE2 650 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 SLC44A5Q8NCS7 719 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 CTCFLQ8NI51 663 aaPredicted RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 SMARCC2Q8TAQ2 1214 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 NUP133Q8WUM0 1156 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 TNPO1Q92973 898 aaKnown RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 DYNLL2Q96FJ2 89 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 GMLQ99445 158 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 ZKSCAN3Q9BRR0 538 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 KAT14Q9H8E8 782 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 VEZTQ9HBM0 779 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 NCOA5Q9HCD5 579 aaKnown RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 DDX4Q9NQI0 724 aaKnown RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 GPHNQ9NQX3 736 aaPredicted RBP6.95□□□□□ -1.3
HMGB3-202ENST00000419110 KCNQ5Q9NR82 932 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 ZSWIM5Q9P217 1185 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 GJA3Q9Y6H8 435 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 LOC285556D6RIA3 1793 aa6.95□□□□□ -1.3
HMGB3-202ENST00000419110 CLRN2A0PK11 232 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 JAK2O60674 1132 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 F13A1P00488 732 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 ZSCAN22P10073 491 aaPredicted RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 LMOD1P29536 600 aaPredicted RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 CDK8P49336 464 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 GMPSP49915 693 aaPredicted RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 PLCD1P51178 756 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 CACNB3P54284 484 aa6.94□□□□□ -1.3
HMGB3-202ENST00000419110 ZNF280AP59817 542 aaPredicted RBP6.94□□□□□ -1.3
HMGB3-202ENST00000419110 TFAP4Q01664 338 aa6.94□□□□□ -1.3
Retrieved 100 of 20,778 RNA–protein pairs in 118.5 ms