RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 IL17RBQ9NRM6 502 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 CLIP2Q9UDT6 1046 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 TTF2Q9UNY4 1162 aaKnown RBP12.79□□□□□ -0.36
TCOF1-203ENST00000394269 KRT2P35908 639 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 PKN1Q16512 942 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 BRMS1Q9HCU9 246 aa12.79□□□□□ -0.36
TCOF1-203ENST00000394269 DDX52Q9Y2R4 599 aaKnown RBP eCLIP12.79□□□□□ -0.36
TCOF1-203ENST00000394269 GOLGA6L6A8MZA4 724 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 CACNB3P54284 484 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 LRMPQ12912 555 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 RILPL1Q5EBL4 403 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 RBM43Q6ZSC3 357 aaKnown RBP12.78□□□□□ -0.36
TCOF1-203ENST00000394269 SHISA4Q96DD7 197 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 NAT10Q9H0A0 1025 aaKnown RBP12.78□□□□□ -0.36
TCOF1-203ENST00000394269 BAZ2AQ9UIF9 1905 aaKnown RBP12.78□□□□□ -0.36
TCOF1-203ENST00000394269 SMC2O95347 1197 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 CALM1P0DP23 149 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 CALM2P0DP24 149 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 CALM3P0DP25 149 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 MCM7P33993 719 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 RBM6P78332 1123 aaKnown RBP12.78□□□□□ -0.36
TCOF1-203ENST00000394269 TMTC3Q6ZXV5 915 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 HEATR3Q7Z4Q2 680 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 CLEC10AQ8IUN9 316 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 STAMQ92783 540 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 ORC4O43929 436 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 LMOD1P29536 600 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-203ENST00000394269 AFMP43652 599 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 TCP10Q12799 353 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 PTPN21Q16825 1174 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 KIAA0825Q8IV33 1275 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 EYA3Q99504 573 aa12.78□□□□□ -0.36
TCOF1-203ENST00000394269 RTFDC1Q9BY42 306 aaPredicted RBP12.78□□□□□ -0.36
TCOF1-203ENST00000394269 RBM28Q9NW13 759 aaKnown RBP12.78□□□□□ -0.36
TCOF1-203ENST00000394269 STK36Q9NRP7 1315 aa12.77□□□□□ -0.36
TCOF1-203ENST00000394269 TRIM75PA6NK02 468 aa12.77□□□□□ -0.36
TCOF1-203ENST00000394269 CHRNA5P30532 468 aa12.77□□□□□ -0.36
TCOF1-203ENST00000394269 RCSD1Q6JBY9 416 aa12.77□□□□□ -0.36
TCOF1-203ENST00000394269 FOXP1Q9H334 677 aaPredicted RBP12.77□□□□□ -0.36
TCOF1-203ENST00000394269 FAM13BQ9NYF5 915 aa12.77□□□□□ -0.36
TCOF1-203ENST00000394269 VWA3AA6NCI4 1184 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 MPHOSPH10O00566 681 aaKnown RBP12.77□□□□□ -0.37
TCOF1-203ENST00000394269 WNT7AO00755 349 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 ADAMTS3O15072 1205 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 CDC25AP30304 524 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 KIF5BP33176 963 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 CDK8P49336 464 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 ZNF75DP51815 510 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 USP17L2Q6R6M4 530 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 DHX58Q96C10 678 aa12.77□□□□□ -0.37
TCOF1-203ENST00000394269 PDGFDQ9GZP0 370 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-203ENST00000394269 COL5A3P25940 1745 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-203ENST00000394269 CICQ96RK0 1608 aaPredicted RBP12.77□□□□□ -0.37
TCOF1-203ENST00000394269 PRPF3O43395 683 aaKnown RBP12.76□□□□□ -0.37
TCOF1-203ENST00000394269 SRGNP10124 158 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 IQCB1Q15051 598 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 EPSTI1Q96J88 318 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 UBA5Q9GZZ9 404 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 CSRNP2Q9H175 543 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 PPP6R2O75170 966 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 ZBTB7AO95365 584 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 CASP1P29466 404 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 SBK1Q52WX2 424 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 ZSCAN29Q8IWY8 852 aaPredicted RBP12.76□□□□□ -0.37
TCOF1-203ENST00000394269 SERTAD1Q9UHV2 236 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 IRS2Q9Y4H2 1338 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 CUTAO60888 179 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 DDAH1O94760 285 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 SCG2P13521 617 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 ARID5BQ14865 1188 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 CREBRFQ8IUR6 639 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 CRAMP1Q96RY5 1269 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 TMEM47Q9BQJ4 181 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 USP40Q9NVE5 1235 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 PYCARDQ9ULZ3 195 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 MYH2Q9UKX2 1941 aa12.76□□□□□ -0.37
TCOF1-203ENST00000394269 FUT2Q10981 343 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 C2CD5Q86YS7 1000 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 SP8Q8IXZ3 490 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 RASSF8Q8NHQ8 419 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 ATP6V0A2Q9Y487 856 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 PCDHA5Q9Y5H7 936 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 C4BP0C0L5 1744 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 FAM196BA6NMK8 535 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 PCP11498 1178 aaKnown RBP12.75□□□□□ -0.37
TCOF1-203ENST00000394269 DHX40Q8IX18 779 aaKnown RBP12.75□□□□□ -0.37
TCOF1-203ENST00000394269 DAGLAQ9Y4D2 1042 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 PCDHAC2Q9Y5I4 1007 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 FLT1P17948 1338 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 IL1R1P14778 569 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 RASA1P20936 1047 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 PPP2R5BQ15173 497 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 ZNF772Q68DY9 489 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-203ENST00000394269 MTA3Q9BTC8 594 aa12.75□□□□□ -0.37
TCOF1-203ENST00000394269 FRMPD2Q68DX3 1309 aaPredicted RBP12.75□□□□□ -0.37
TCOF1-203ENST00000394269 HOXA10P31260 410 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-203ENST00000394269 PTGDRQ13258 359 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 NOLC1Q14978 699 aaKnown RBP eCLIP12.74□□□□□ -0.37
TCOF1-203ENST00000394269 EZH2Q15910 746 aaKnown RBP12.74□□□□□ -0.37
TCOF1-203ENST00000394269 RESP18Q5W5W9 173 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms