RNA–Protein interactions for RNA: ENST00000343765.6

VIPAS39-202, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VIPAS39, Length 2,761 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-202ENST00000343765 VPS72Q15906 364 aa17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 TMTC3Q6ZXV5 915 aa17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 SRBD1Q8N5C6 995 aaKnown RBP17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 CCDC150Q8NCX0 1101 aa17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 SMARCE1Q969G3 411 aa17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 EPSTI1Q96J88 318 aa17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 RBM28Q9NW13 759 aaKnown RBP17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 MCM9Q9NXL9 1143 aa17.05■□□□□ 0.32
VIPAS39-202ENST00000343765 PPP2R5BQ15173 497 aa17.04■□□□□ 0.32
VIPAS39-202ENST00000343765 ZNF174Q15697 407 aa17.04■□□□□ 0.32
VIPAS39-202ENST00000343765 MTERF4Q7Z6M4 381 aaKnown RBP17.04■□□□□ 0.32
VIPAS39-202ENST00000343765 CTCFLQ8NI51 663 aaPredicted RBP17.04■□□□□ 0.32
VIPAS39-202ENST00000343765 DDX52Q9Y2R4 599 aaKnown RBP eCLIP17.04■□□□□ 0.32
VIPAS39-202ENST00000343765 NAA30Q147X3 362 aaPredicted RBP17.04■□□□□ 0.32
VIPAS39-202ENST00000343765 MTMR7Q9Y216 660 aa17.04■□□□□ 0.32
VIPAS39-202ENST00000343765 TOM1O60784 492 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 VEGFAP15692 232 aaPredicted RBP17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 CASP1P29466 404 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 AFMP43652 599 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 FMR1Q06787 632 aaKnown RBP eCLIP17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 MYH6P13533 1939 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 MYH13Q9UKX3 1938 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 A0A087X0B3 334 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 ACTN4O43707 911 aaKnown RBP17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 DDAH1O94760 285 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 FGRP09769 529 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 CALM1P0DP23 149 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 CALM2P0DP24 149 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 CALM3P0DP25 149 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 GLIPR1L2Q4G1C9 344 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 E4F1Q66K89 784 aaPredicted RBP17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 NYAP1Q6ZVC0 841 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 BRMS1Q9HCU9 246 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 PAXBP1Q9Y5B6 917 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 CNTNAP5Q8WYK1 1306 aa17.03■□□□□ 0.32
VIPAS39-202ENST00000343765 TM4SF1P30408 202 aa17.02■□□□□ 0.32
VIPAS39-202ENST00000343765 RC3H1Q5TC82 1133 aaKnown RBP17.02■□□□□ 0.32
VIPAS39-202ENST00000343765 CTIFO43310 598 aaKnown RBP17.02■□□□□ 0.31
VIPAS39-202ENST00000343765 ZNF579Q8NAF0 562 aaKnown RBP17.02■□□□□ 0.31
VIPAS39-202ENST00000343765 DYNLL2Q96FJ2 89 aa17.02■□□□□ 0.31
VIPAS39-202ENST00000343765 ATP8A2Q9NTI2 1148 aa17.02■□□□□ 0.31
VIPAS39-202ENST00000343765 CBFA2T2O43439 604 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 PCP11498 1178 aaKnown RBP17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 RFC4P35249 363 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 USP5P45974 858 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 NFIXQ14938 502 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 DIXDC1Q155Q3 683 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 SYMPKQ92797 1274 aaKnown RBP17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 ARPP21Q9UBL0 812 aaPredicted RBP17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 NFE2L3Q9Y4A8 694 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 ADAMTS3O15072 1205 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 ORC4O43929 436 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 NLRP5P59047 1200 aa17.01■□□□□ 0.31
VIPAS39-202ENST00000343765 VWA3AA6NCI4 1184 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 CDK11BP21127 795 aaKnown RBP17■□□□□ 0.31
VIPAS39-202ENST00000343765 NPY5RQ15761 445 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 GRIK5Q16478 980 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 PIK3AP1Q6ZUJ8 805 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 PPP1R13BQ96KQ4 1090 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 NRDCO43847 1150 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 TOP1P11387 765 aaKnown RBP17■□□□□ 0.31
VIPAS39-202ENST00000343765 NCBP1Q09161 790 aaKnown RBP17■□□□□ 0.31
VIPAS39-202ENST00000343765 TTC38Q5R3I4 469 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 KLHL10Q6JEL2 608 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 SH3RF3Q8TEJ3 882 aaPredicted RBP17■□□□□ 0.31
VIPAS39-202ENST00000343765 STAMQ92783 540 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 INTS13Q9NVM9 706 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 LDHBP07195 334 aaKnown RBP17■□□□□ 0.31
VIPAS39-202ENST00000343765 TFAP4Q01664 338 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 MORC3Q14149 939 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 USP21Q9UK80 565 aa17■□□□□ 0.31
VIPAS39-202ENST00000343765 SCG2P13521 617 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 SARSP49591 514 aaKnown RBP16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 PTGDRQ13258 359 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 PDCL2Q8N4E4 241 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 UBE2Q2Q8WVN8 375 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 NOL12Q9UGY1 213 aaKnown RBP eCLIP16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 V9GYY5 206 aaPredicted RBP16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 PDS5AQ29RF7 1337 aaKnown RBP16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 UBAP1LF5GYI3 381 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 MCM7P33993 719 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 PPP4R3BQ5MIZ7 849 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 VSTM4Q8IW00 320 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 MLKLQ8NB16 471 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 GPKOWQ92917 476 aaPredicted RBP eCLIP16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 KAT14Q9H8E8 782 aa16.99■□□□□ 0.31
VIPAS39-202ENST00000343765 RCSD1Q6JBY9 416 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 FAM196AQ6ZSG2 479 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 SMYD4Q8IYR2 804 aaPredicted RBP16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 SLC44A5Q8NCS7 719 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 TNFRSF25Q93038 417 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 SAMSN1Q9NSI8 373 aaKnown RBP16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 SAP30BPQ9UHR5 308 aaKnown RBP16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 USP17L3A6NCW0 530 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 USP17L4A6NCW7 530 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 STX17P56962 302 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 NT5DC1Q5TFE4 455 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 SPTY2D1Q68D10 685 aaPredicted RBP16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 KANK3Q6NY19 840 aa16.98■□□□□ 0.31
VIPAS39-202ENST00000343765 USP17L1Q7RTZ2 530 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms