RNA–Protein interactions for RNA: ENSMUST00000005705.7

Trim28-201, Transcript of Transcription intermediary factor 1-beta, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Trim28, Length 3,245 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Trim28-201ENSMUST00000005705 Gm9955Q8CEJ8 102 aa8.45□□□□□ -1.06
Trim28-201ENSMUST00000005705 Lrp2A2ARV4 4660 aa8.44□□□□□ -1.06
Trim28-201ENSMUST00000005705 Ryr2E9Q401 4966 aaKnown RBP8.38□□□□□ -1.07
Trim28-201ENSMUST00000005705 Gm10318A0A1W2P728 225 aa8.37□□□□□ -1.07
Trim28-201ENSMUST00000005705 Kiaa1109A2AAE1 5005 aa8.36□□□□□ -1.07
Trim28-201ENSMUST00000005705 Rpl37Q9D823 97 aa8.32□□□□□ -1.08
Trim28-201ENSMUST00000005705 2310057N15RikQ9D6T8 200 aa8.3□□□□□ -1.08
Trim28-201ENSMUST00000005705 Herc2Q4U2R1 4836 aa8.23□□□□□ -1.09
Trim28-201ENSMUST00000005705 Dnah8Q91XQ0 4731 aa8.23□□□□□ -1.09
Trim28-201ENSMUST00000005705 PcloQ9QYX7 5068 aa8.22□□□□□ -1.09
Trim28-201ENSMUST00000005705 Gm21887J3QQ04 176 aa8.21□□□□□ -1.09
Trim28-201ENSMUST00000005705 Crct1Q6PAI5 102 aa8.15□□□□□ -1.11
Trim28-201ENSMUST00000005705 Dnhd1D3Z2X2 4750 aa8.11□□□□□ -1.11
Trim28-201ENSMUST00000005705 Krtap3-1A2A591 98 aa8.05□□□□□ -1.12
Trim28-201ENSMUST00000005705 Gm19426M0QWC7 77 aa7.99□□□□□ -1.13
Trim28-201ENSMUST00000005705 Gm9112A2AI92 75 aa7.94□□□□□ -1.14
Trim28-201ENSMUST00000005705 Gm17416Q30KP4 66 aa7.89□□□□□ -1.15
Trim28-201ENSMUST00000005705 B930094E09RikQ8C4T2 136 aa7.87□□□□□ -1.15
Trim28-201ENSMUST00000005705 Krtap13-1Q8K198 168 aa7.84□□□□□ -1.15
Trim28-201ENSMUST00000005705 2210017I01RikA0A0A6YVV1 95 aa7.81□□□□□ -1.16
Trim28-201ENSMUST00000005705 Spink7Q6IE32 76 aa7.81□□□□□ -1.16
Trim28-201ENSMUST00000005705 Ubr4A2AN08 5180 aa7.8□□□□□ -1.16
Trim28-201ENSMUST00000005705 BC029722A0A0N4SW31 51 aa7.79□□□□□ -1.16
Trim28-201ENSMUST00000005705 Herc1E9PZP8 4859 aa7.79□□□□□ -1.16
Trim28-201ENSMUST00000005705 Gm19668J3QMD1 248 aa7.77□□□□□ -1.17
Trim28-201ENSMUST00000005705 Gm19402J3QJV4 266 aa7.76□□□□□ -1.17
Trim28-201ENSMUST00000005705 Birc6O88738 4882 aa7.7□□□□□ -1.18
Trim28-201ENSMUST00000005705 Krtap7-1Q9D3I6 87 aa7.69□□□□□ -1.18
Trim28-201ENSMUST00000005705 Fat4Q2PZL6 4981 aa7.69□□□□□ -1.18
Trim28-201ENSMUST00000005705 Fam229aB2KGE5 128 aa7.69□□□□□ -1.18
Trim28-201ENSMUST00000005705 Sec61bQ9CQS8 96 aaKnown RBP7.58□□□□□ -1.2
Trim28-201ENSMUST00000005705 ZanO88799 5376 aa7.5□□□□□ -1.21
Trim28-201ENSMUST00000005705 Krtap1-5A2A590 122 aa7.39□□□□□ -1.23
Trim28-201ENSMUST00000005705 Krtap16-3Q8C1I6 86 aa7.39□□□□□ -1.23
Trim28-201ENSMUST00000005705 Gm40193A0A1B0GT39 78 aa7.34□□□□□ -1.23
Trim28-201ENSMUST00000005705 Hmcn2A2AJ76 5100 aa7.31□□□□□ -1.24
Trim28-201ENSMUST00000005705 Rnf213E9Q555 5152 aaKnown RBP7.31□□□□□ -1.24
Trim28-201ENSMUST00000005705 Gm17402F6Z0L5 76 aa7.3□□□□□ -1.24
Trim28-201ENSMUST00000005705 Ush2AQ2QI47 5193 aa7.29□□□□□ -1.24
Trim28-201ENSMUST00000005705 Camk2n1Q6QWF9 78 aa7.29□□□□□ -1.24
Trim28-201ENSMUST00000005705 4932415D10RikA0A1W2P6U8 4986 aa7.26□□□□□ -1.25
Trim28-201ENSMUST00000005705 Sprr2a3Q4KL71 83 aa7.26□□□□□ -1.25
Trim28-201ENSMUST00000005705 Sprr2a1Q9CQK8 83 aa7.26□□□□□ -1.25
Trim28-201ENSMUST00000005705 Krtap19-1Q925H2 87 aa7.23□□□□□ -1.25
Trim28-201ENSMUST00000005705 Krtap19-3Q925H6 87 aa7.21□□□□□ -1.26
Trim28-201ENSMUST00000005705 LorP18165 486 aa7.16□□□□□ -1.26
Trim28-201ENSMUST00000005705 Krtap17-1A2A5X6 109 aa7.07□□□□□ -1.28
Trim28-201ENSMUST00000005705 Lce1jD3YUU5 139 aa7.05□□□□□ -1.28
Trim28-201ENSMUST00000005705 Lce1mQ9CR91 182 aa7.03□□□□□ -1.28
Trim28-201ENSMUST00000005705 Krtap1-4Q3V2D6 188 aa7.02□□□□□ -1.29
Trim28-201ENSMUST00000005705 Krtap1-3A2A588 173 aa6.93□□□□□ -1.3
Trim28-201ENSMUST00000005705 Gm18596A0A1W2P860 280 aa6.82□□□□□ -1.32
Trim28-201ENSMUST00000005705 Tnp1P10856 55 aa6.79□□□□□ -1.32
Trim28-201ENSMUST00000005705 Krtap12-1Q9Z287 130 aa6.75□□□□□ -1.33
Trim28-201ENSMUST00000005705 Krtap19-9aF8WH65 55 aa6.67□□□□□ -1.34
Trim28-201ENSMUST00000005705 Gm9789Q8BIG3 52 aa6.64□□□□□ -1.35
Trim28-201ENSMUST00000005705 Mdn1A2ANY6 5589 aaKnown RBP6.62□□□□□ -1.35
Trim28-201ENSMUST00000005705 Lce1iQ9D6P5 149 aa6.51□□□□□ -1.37
Trim28-201ENSMUST00000005705 Gm7735D3YX18 52 aa6.51□□□□□ -1.37
Trim28-201ENSMUST00000005705 Krtap9-5A2A5X3 358 aa6.5□□□□□ -1.37
Trim28-201ENSMUST00000005705 Krtap9-3Q3V2C1 136 aa6.5□□□□□ -1.37
Trim28-201ENSMUST00000005705 Lce1a2Q9D1K4 149 aa6.5□□□□□ -1.37
Trim28-201ENSMUST00000005705 SspoQ8CG65 4998 aa6.48□□□□□ -1.37
Trim28-201ENSMUST00000005705 Prm1P02319 51 aa6.48□□□□□ -1.37
Trim28-201ENSMUST00000005705 Krtap19-2Q925I0 141 aa6.39□□□□□ -1.39
Trim28-201ENSMUST00000005705 Krtap8-1O08633 61 aa6.29□□□□□ -1.4
Trim28-201ENSMUST00000005705 Lce1hQ9D6R3 140 aa6.28□□□□□ -1.4
Trim28-201ENSMUST00000005705 Krtap19-9bQ99NG9 58 aa6.26□□□□□ -1.41
Trim28-201ENSMUST00000005705 2310046K23RikA0A0A6YVW6 87 aa6.2□□□□□ -1.42
Trim28-201ENSMUST00000005705 Gm10061D3Z714 54 aa6.08□□□□□ -1.44
Trim28-201ENSMUST00000005705 Mt2P02798 61 aa6.08□□□□□ -1.44
Trim28-201ENSMUST00000005705 Gm6358A0A087WPH4 74 aa6□□□□□ -1.45
Trim28-201ENSMUST00000005705 Lce1dQ9D731 133 aa5.98□□□□□ -1.45
Trim28-201ENSMUST00000005705 Muc5bE9Q5I3 4800 aa5.91□□□□□ -1.46
Trim28-201ENSMUST00000005705 Gm10272F7CZ33 110 aa5.84□□□□□ -1.47
Trim28-201ENSMUST00000005705 Fsip2A2ARZ3 6995 aa5.81□□□□□ -1.48
Trim28-201ENSMUST00000005705 Syne1Q6ZWR6 8799 aa5.77□□□□□ -1.49
Trim28-201ENSMUST00000005705 Lce1eQ9D139 143 aa5.74□□□□□ -1.49
Trim28-201ENSMUST00000005705 Gm11569B1AQB1 180 aa5.72□□□□□ -1.49
Trim28-201ENSMUST00000005705 4933428G20RikQ9D3X4 101 aa5.69□□□□□ -1.5
Trim28-201ENSMUST00000005705 Krtap22-2J3QNX6 67 aa5.63□□□□□ -1.51
Trim28-201ENSMUST00000005705 Muc16A0A140LJ72 8478 aa5.61□□□□□ -1.51
Trim28-201ENSMUST00000005705 Sprr2gO70558 76 aa5.59□□□□□ -1.52
Trim28-201ENSMUST00000005705 Lce1cQ9D1C5 147 aa5.58□□□□□ -1.52
Trim28-201ENSMUST00000005705 Gm11938Q9D3H4 131 aa5.58□□□□□ -1.52
Trim28-201ENSMUST00000005705 Syne2Q6ZWQ0 6874 aaKnown RBP5.53□□□□□ -1.52
Trim28-201ENSMUST00000005705 Krtap31-1Q9D644 177 aa5.43□□□□□ -1.54
Trim28-201ENSMUST00000005705 Sprr2dO70555 85 aa5.38□□□□□ -1.55
Trim28-201ENSMUST00000005705 Krtap4-6Q3V4B7 195 aa5.37□□□□□ -1.55
Trim28-201ENSMUST00000005705 Gm10100J3QK64 120 aa5.36□□□□□ -1.55
Trim28-201ENSMUST00000005705 Lce1fB9EJP6 147 aa5.35□□□□□ -1.55
Trim28-201ENSMUST00000005705 Lce1a1Q9CQH5 143 aa5.35□□□□□ -1.55
Trim28-201ENSMUST00000005705 Lce3bQ9CQM7 98 aa5.33□□□□□ -1.56
Trim28-201ENSMUST00000005705 Gm38119A0A0A6YX29 146 aa5.3□□□□□ -1.56
Trim28-201ENSMUST00000005705 Gm10142J3KMP7 120 aa5.21□□□□□ -1.58
Trim28-201ENSMUST00000005705 Krtap4-1Q3UUY3 169 aa5.16□□□□□ -1.58
Trim28-201ENSMUST00000005705 Mt4P47945 62 aa5.15□□□□□ -1.58
Trim28-201ENSMUST00000005705 Gm11562A0PK51 136 aa5.13□□□□□ -1.59
Trim28-201ENSMUST00000005705 Lce3cQ91V05 98 aa5.12□□□□□ -1.59
Trim28-201ENSMUST00000005705 Macf1Q9QXZ0 7354 aaKnown RBP5.1□□□□□ -1.59
Retrieved 100 of 22,080 RNA–protein pairs in 9.3 ms