RNA–Protein interactions for RNA: YNL288W

CAF40, Transcript of Component of the CCR4-NOT transcriptional complex, yeastyeast

Gene CAF40, Length 1,122 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CAF40YNL288W SFL1P20134 766 aa6.31□□□□□ -1.4
CAF40YNL288W STE11P23561 717 aa6.31□□□□□ -1.4
CAF40YNL288W GGA2P38817 585 aaKnown RBP6.31□□□□□ -1.4
CAF40YNL288W PRM9P39551 298 aa6.31□□□□□ -1.4
CAF40YNL288W KHA1P40309 873 aa6.31□□□□□ -1.4
CAF40YNL288W YIL161WP40449 235 aaKnown RBP6.31□□□□□ -1.4
CAF40YNL288W NDC80P40460 691 aa6.31□□□□□ -1.4
CAF40YNL288W UFE1P41834 346 aa6.31□□□□□ -1.4
CAF40YNL288W YJR079WP47126 109 aa6.31□□□□□ -1.4
CAF40YNL288W MRX6P48564 524 aa6.31□□□□□ -1.4
CAF40YNL288W YNL040WP53960 456 aaPredicted RBP6.31□□□□□ -1.4
CAF40YNL288W KTR6P54070 446 aa6.31□□□□□ -1.4
CAF40YNL288W TOF2Q02208 771 aa6.31□□□□□ -1.4
CAF40YNL288W ELP3Q02908 557 aaKnown RBP6.31□□□□□ -1.4
CAF40YNL288W PIR3Q03180 325 aa6.31□□□□□ -1.4
CAF40YNL288W YMR114CQ04471 368 aaKnown RBP6.31□□□□□ -1.4
CAF40YNL288W POB3Q04636 552 aaKnown RBP6.31□□□□□ -1.4
CAF40YNL288W GRX8Q05926 109 aa6.31□□□□□ -1.4
CAF40YNL288W LPX1Q12405 387 aaKnown RBP6.31□□□□□ -1.4
CAF40YNL288W SPO21Q12411 609 aa6.31□□□□□ -1.4
CAF40YNL288W WHI5Q12416 295 aa6.31□□□□□ -1.4
CAF40YNL288W PUP3P25451 205 aaKnown RBP6.3□□□□□ -1.4
CAF40YNL288W PPZ1P26570 692 aa6.3□□□□□ -1.4
CAF40YNL288W YEL043WP32618 956 aa6.3□□□□□ -1.4
CAF40YNL288W SGE1P33335 543 aa6.3□□□□□ -1.4
CAF40YNL288W POL12P38121 705 aaPredicted RBP6.3□□□□□ -1.4
CAF40YNL288W LAM1P38851 1228 aa6.3□□□□□ -1.4
CAF40YNL288W SHU2P38957 223 aa6.3□□□□□ -1.4
CAF40YNL288W ARG2P40360 574 aa6.3□□□□□ -1.4
CAF40YNL288W MAD1P40957 749 aa6.3□□□□□ -1.4
CAF40YNL288W GYP8P43570 497 aa6.3□□□□□ -1.4
CAF40YNL288W RPC17P47076 161 aa6.3□□□□□ -1.4
CAF40YNL288W CWC22P53333 577 aaKnown RBP6.3□□□□□ -1.4
CAF40YNL288W TMN2Q04562 672 aa6.3□□□□□ -1.4
CAF40YNL288W ECM38Q05902 660 aaPredicted RBP6.3□□□□□ -1.4
CAF40YNL288W THI7Q05998 598 aa6.3□□□□□ -1.4
CAF40YNL288W GIC2Q06648 383 aa6.3□□□□□ -1.4
CAF40YNL288W TPO1Q07824 586 aa6.3□□□□□ -1.4
CAF40YNL288W IZH4Q99393 312 aa6.3□□□□□ -1.4
CAF40YNL288W MET16P18408 261 aaPredicted RBP6.29□□□□□ -1.4
CAF40YNL288W CAP1P28495 268 aaKnown RBP6.29□□□□□ -1.4
CAF40YNL288W MEI4P29467 408 aa6.29□□□□□ -1.4
CAF40YNL288W YKL077WP36081 392 aa6.29□□□□□ -1.4
CAF40YNL288W FUI1P38196 639 aa6.29□□□□□ -1.4
CAF40YNL288W FSH1P38777 243 aaKnown RBP6.29□□□□□ -1.4
CAF40YNL288W NMD3P38861 518 aaKnown RBP6.29□□□□□ -1.4
CAF40YNL288W SAK1P38990 1142 aa6.29□□□□□ -1.4
CAF40YNL288W END3P39013 349 aa6.29□□□□□ -1.4
CAF40YNL288W VAC8P39968 578 aa6.29□□□□□ -1.4
CAF40YNL288W MNN11P46985 422 aaKnown RBP6.29□□□□□ -1.4
CAF40YNL288W YML6P51998 286 aa6.29□□□□□ -1.4
CAF40YNL288W YNL144CP53907 740 aa6.29□□□□□ -1.4
CAF40YNL288W YPL014WQ02606 381 aa6.29□□□□□ -1.4
CAF40YNL288W RTN1Q04947 295 aaKnown RBP6.29□□□□□ -1.4
CAF40YNL288W YDR278CQ05612 105 aa6.29□□□□□ -1.4
CAF40YNL288W PUF2Q12221 1075 aaKnown RBP RIP-Chip data6.29□□□□□ -1.4 RIP-Chip
CAF40YNL288W PDH1Q12428 516 aaKnown RBP6.29□□□□□ -1.4
CAF40YNL288W ZRT2Q12436 422 aa6.29□□□□□ -1.4
CAF40YNL288W HIS1P00498 297 aaKnown RBP6.28□□□□□ -1.4
CAF40YNL288W PET111P08468 800 aa6.28□□□□□ -1.4
CAF40YNL288W SIR1P21691 654 aa6.28□□□□□ -1.4
CAF40YNL288W SLY1P22213 666 aa6.28□□□□□ -1.4
CAF40YNL288W SGF29P25554 259 aa6.28□□□□□ -1.4
CAF40YNL288W DPB3P27344 201 aa6.28□□□□□ -1.4
CAF40YNL288W SEC6P32844 805 aa6.28□□□□□ -1.4
CAF40YNL288W YKL097CP34245 136 aa6.28□□□□□ -1.4
CAF40YNL288W KAP104P38217 918 aaKnown RBP6.28□□□□□ -1.4
CAF40YNL288W REI1P38344 393 aaPredicted RBP6.28□□□□□ -1.4
CAF40YNL288W MMS21P38632 267 aa6.28□□□□□ -1.4
CAF40YNL288W AIM18P38884 321 aa6.28□□□□□ -1.4
CAF40YNL288W SMF1P38925 575 aa6.28□□□□□ -1.4
CAF40YNL288W EDC3P39998 551 aaKnown RBP6.28□□□□□ -1.4
CAF40YNL288W YJL132WP47014 750 aa6.28□□□□□ -1.4
CAF40YNL288W COQ6P53318 479 aa6.28□□□□□ -1.4
CAF40YNL288W MAL13P53338 473 aa6.28□□□□□ -1.4
CAF40YNL288W VPS9P54787 451 aa6.28□□□□□ -1.4
CAF40YNL288W BET4Q00618 327 aa6.28□□□□□ -1.4
CAF40YNL288W MTG1Q03151 367 aaPredicted RBP6.28□□□□□ -1.4
CAF40YNL288W ARA2Q04212 335 aa6.28□□□□□ -1.4
CAF40YNL288W SEG1Q04279 960 aa6.28□□□□□ -1.4
CAF40YNL288W DAL4Q04895 635 aa6.28□□□□□ -1.4
CAF40YNL288W MED7Q08278 222 aa6.28□□□□□ -1.4
CAF40YNL288W FLC1Q08967 793 aa6.28□□□□□ -1.4
CAF40YNL288W AIM41Q12032 185 aa6.28□□□□□ -1.4
CAF40YNL288W YDR018CQ12185 396 aa6.28□□□□□ -1.4
CAF40YNL288W GPM3Q12326 303 aa6.28□□□□□ -1.4
CAF40YNL288W HIS5P07172 385 aa6.27□□□□□ -1.41
CAF40YNL288W OMA1P36163 345 aa6.27□□□□□ -1.41
CAF40YNL288W KTR4P38131 464 aa6.27□□□□□ -1.41
CAF40YNL288W TIF5P38431 405 aaKnown RBP6.27□□□□□ -1.41
CAF40YNL288W NEM1P38757 446 aa6.27□□□□□ -1.41
CAF40YNL288W CHS6P40955 746 aa6.27□□□□□ -1.41
CAF40YNL288W BST1P43571 1029 aa6.27□□□□□ -1.41
CAF40YNL288W TCB2P48231 1178 aa6.27□□□□□ -1.41
CAF40YNL288W HLJ1P48353 224 aa6.27□□□□□ -1.41
CAF40YNL288W RFX1P48743 811 aa6.27□□□□□ -1.41
CAF40YNL288W PRP24P49960 444 aaKnown RBP6.27□□□□□ -1.41
CAF40YNL288W RIM8P53179 542 aa6.27□□□□□ -1.41
CAF40YNL288W NRD1P53617 575 aaKnown RBP RIP-Chip data6.27□□□□□ -1.41not detected
CAF40YNL288W IMP4P53941 290 aaKnown RBP6.27□□□□□ -1.41
Retrieved 100 of 5,963 RNA–protein pairs in 13.9 ms