RNA–Protein interactions for RNA: YMR309C

NIP1, Transcript of eIF3c subunit of the eukaryotic translation initiation factor 3 (eIF3), yeast

Gene NIP1, Length 2,439 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NIP1	YMR309C	FCP1	Q03254	732 aa		0.72	□□□□□ -2.29
NIP1	YMR309C	ECM38	Q05902	660 aa	Predicted RBP	0.72	□□□□□ -2.29
NIP1	YMR309C	PDR8	Q06149	701 aa		0.72	□□□□□ -2.29
NIP1	YMR309C	YDL242W	Q07746	117 aa		0.72	□□□□□ -2.29
NIP1	YMR309C	PEX15	Q08215	383 aa		0.72	□□□□□ -2.29
NIP1	YMR309C	GSH2	Q08220	491 aa		0.72	□□□□□ -2.29
NIP1	YMR309C	NUR1	Q12066	484 aa		0.72	□□□□□ -2.29
NIP1	YMR309C	LYS21	Q12122	440 aa	Known RBP	0.72	□□□□□ -2.29
NIP1	YMR309C	LCB4	Q12246	624 aa		0.72	□□□□□ -2.29
NIP1	YMR309C	SUI3	P09064	285 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	PRP16	P15938	1071 aa	Predicted RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	PDE1	P22434	369 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	PHO3	P24031	467 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	PRE2	P30656	287 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	KES1	P35844	434 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	RKM3	P38222	552 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	VBA2	P38358	474 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	DHH1	P39517	506 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	FAA2	P39518	744 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	YND1	P40009	630 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	YEN1	P40028	759 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	SCS2	P40075	244 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	NOP2	P40991	618 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	NIT2	P47016	307 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	ZAP1	P47043	880 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	UBP8	P50102	471 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	YNR071C	P53757	342 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	IMP4	P53941	290 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	YAT1	P80235	687 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	BET4	Q00618	327 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	DIG1	Q03063	452 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	VPS64	Q03944	604 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	RAD34	Q06665	692 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	THI3	Q07471	609 aa		0.71	□□□□□ -2.3
NIP1	YMR309C	RTK1	Q12100	620 aa	Predicted RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	DBP10	Q12389	995 aa	Known RBP	0.71	□□□□□ -2.3
NIP1	YMR309C	RPL42A	P0CX27	106 aa	Known RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	RPL42B	P0CX28	106 aa	Known RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	CDC23	P16522	626 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	CNA1	P23287	553 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	YCR061W	P25639	631 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	PTC6	P25646	442 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	GCD7	P32502	381 aa	Predicted RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	TFC4	P33339	1025 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	TGL1	P34163	548 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	ERV46	P39727	415 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	AZF1	P41696	914 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	YGL081W	P53156	320 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	TRS31	Q03337	283 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	IZH1	Q03419	316 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	ARA2	Q04212	335 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	PHM6	Q05637	104 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	YPL191C	Q08930	360 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	LEA1	Q08963	238 aa	Predicted RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	TMA17	Q12513	150 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	SES1	P07284	462 aa	Known RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	VAS1	P07806	1104 aa	Known RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	LAC1	P28496	418 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	HEM12	P32347	362 aa	Predicted RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	EXO84	P38261	753 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	ARN1	P38731	627 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	ERC1	P38767	581 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	BZZ1	P38822	633 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	MAD2	P40958	196 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	YGL036W	P53185	909 aa	Predicted RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	YNL234W	P53857	426 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	ACS1	Q01574	713 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	YPL108W	Q02872	168 aa	Predicted RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	ECM16	Q04217	1267 aa	Known RBP	0.7	□□□□□ -2.3
NIP1	YMR309C	YDR109C	Q04585	715 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	FMP42	Q04991	504 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	TRI1	Q05024	226 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	RSA1	Q08932	381 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	YLR049C	Q12110	428 aa		0.7	□□□□□ -2.3
NIP1	YMR309C	COX1	P00401	534 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	YCR006C	P25350	157 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	TIF3	P34167	436 aa	Known RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	VPS8	P39702	1274 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	ARB1	P40024	610 aa	Known RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	PCL6	P40038	420 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	YJL107C	P42947	387 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	ROK1	P45818	564 aa	Predicted RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	PEX14	P53112	341 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	ESF2	P53743	316 aa	Known RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	YDR415C	Q04033	374 aa	Predicted RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	ECI1	Q05871	280 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	POS5	Q06892	414 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	MCH4	Q08268	501 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	GPN2	Q08726	347 aa	Predicted RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	DIN7	Q12086	430 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	YLR112W	Q12130	139 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	TAH18	Q12181	623 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	RVB2	Q12464	471 aa	Known RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	CYB2	P00175	591 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	MRP2	P10663	115 aa	Predicted RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	KGD2	P19262	463 aa	Predicted RBP	0.69	□□□□□ -2.3
NIP1	YMR309C	GSH1	P32477	678 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	TRS65	P32893	560 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	OCT1	P35999	772 aa		0.69	□□□□□ -2.3
NIP1	YMR309C	YBR071W	P38243	211 aa		0.69	□□□□□ -2.3

Retrieved 100 of 5,963 RNA–protein pairs in 12.7 ms