RNA–Protein interactions for RNA: YMR047C

NUP116, Transcript of FG-nucleoporin component of central core of the nuclear pore complex, yeast

Gene NUP116, Length 3,342 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
NUP116	YMR047C	AAD3	P25612	363 aa		4.98	□□□□□ -1.61
NUP116	YMR047C	RSC6	P25632	483 aa		4.98	□□□□□ -1.61
NUP116	YMR047C	STE13	P33894	931 aa		4.98	□□□□□ -1.61
NUP116	YMR047C	HSM3	P38348	480 aa		4.98	□□□□□ -1.61
NUP116	YMR047C	DRN1	P53255	507 aa	Known RBP	4.98	□□□□□ -1.61
NUP116	YMR047C	LSC2	P53312	427 aa		4.98	□□□□□ -1.61
NUP116	YMR047C	BSC5	P53755	489 aa		4.98	□□□□□ -1.61
NUP116	YMR047C	SLU7	Q02775	382 aa	Known RBP	4.98	□□□□□ -1.61
NUP116	YMR047C	SEG1	Q04279	960 aa		4.98	□□□□□ -1.61
NUP116	YMR047C	LPX1	Q12405	387 aa	Known RBP	4.98	□□□□□ -1.61
NUP116	YMR047C	SPS1	P08458	490 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	RPL40A	P0CH08	128 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	RPL40B	P0CH09	128 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	IME1	P21190	360 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	RPN2	P32565	945 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	SRL3	P36167	246 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	PEX18	P38855	283 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	YER137C	P40083	148 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	MNT3	P40549	630 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	MPS2	P53159	387 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	YGR016W	P53209	190 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	YHM2	Q04013	314 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	COA4	Q05809	96 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	MPH2	P0CD99	609 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	HOM3	P10869	527 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	NCP1	P16603	691 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	URE2	P23202	354 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	HXT1	P32465	570 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	YSW1	P38280	609 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	DUN1	P39009	513 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	PRM9	P39551	298 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	PRK1	P40494	810 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	ALA1	P40825	983 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	CTK3	P46963	296 aa	Predicted RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	HAS1	Q03532	505 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	YMR018W	Q04364	514 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	KAP95	Q06142	861 aa	Known RBP	4.97	□□□□□ -1.61
NUP116	YMR047C	PDE2	P06776	526 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	ATE1	P16639	503 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	MSH2	P25847	964 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	ZRG8	P40021	1076 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	VFA1	P40080	203 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	YJR061W	P40355	935 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	NIS1	P53939	407 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	DML1	Q03652	475 aa		4.97	□□□□□ -1.61
NUP116	YMR047C	DIT1	P21623	536 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	APM3	P38153	483 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	PSY4	P38193	441 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	VMA22	P38784	181 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	YJR079W	P47126	109 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	RPA14	P50106	137 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	LSC1	P53598	329 aa	Known RBP	4.96	□□□□□ -1.62
NUP116	YMR047C	ATG38	Q05789	226 aa	Known RBP	4.96	□□□□□ -1.62
NUP116	YMR047C	AIM39	Q08223	395 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	YOL075C	Q08234	1294 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	BI2	P03873	423 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	TUP1	P16649	713 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	MEF1	P25039	761 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	DAL80	P26343	269 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	VPS51	P36116	164 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	YBR242W	P38331	238 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	BFR1	P38934	470 aa	Known RBP RIP-Chip data	4.96	□□□□□ -1.62	RIP-Chip
NUP116	YMR047C	CDC1	P40986	491 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	SBE2	P42223	864 aa	Known RBP	4.96	□□□□□ -1.62
NUP116	YMR047C	PFD1	P46988	109 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	AIM23	P47015	356 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	GNP1	P48813	663 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	GPD1	Q00055	391 aa	Known RBP	4.96	□□□□□ -1.62
NUP116	YMR047C	MTD1	Q02046	320 aa	Known RBP	4.96	□□□□□ -1.62
NUP116	YMR047C	RPN9	Q04062	393 aa	Known RBP	4.96	□□□□□ -1.62
NUP116	YMR047C	AFT2	Q08957	416 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	BI3	Q9ZZW7	517 aa		4.96	□□□□□ -1.62
NUP116	YMR047C	CDC33	P07260	213 aa	Known RBP	4.95	□□□□□ -1.62
NUP116	YMR047C	PET122	P10355	254 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	KAR1	P11927	433 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	PHO3	P24031	467 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	DPB3	P27344	201 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	YET1	P35723	206 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	APE4	P38821	490 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	PYK2	P52489	506 aa	Known RBP	4.95	□□□□□ -1.62
NUP116	YMR047C	TBF1	Q02457	562 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	SFH1	Q06168	426 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	PUF3	Q07807	879 aa	Known RBP RIP-Chip data	4.95	□□□□□ -1.62	not detected
NUP116	YMR047C	APC11	Q12157	165 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	GPM3	Q12326	303 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	MED4	Q12343	284 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	GPR1	Q12361	961 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	YKL050C	P35736	922 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	BAP2	P38084	609 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	WSC4	P38739	605 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	SPT8	P38915	602 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	NOP16	P40007	231 aa	Known RBP	4.95	□□□□□ -1.62
NUP116	YMR047C	BNA6	P43619	295 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	URB2	P47108	1174 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	FIN1	Q03898	291 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	LSO2	Q3E772	92 aa	Known RBP	4.95	□□□□□ -1.62
NUP116	YMR047C	THR1	P17423	357 aa	Known RBP	4.95	□□□□□ -1.62
NUP116	YMR047C	SIR1	P21691	654 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	CLB4	P24871	460 aa		4.95	□□□□□ -1.62
NUP116	YMR047C	DAL1	P32375	460 aa		4.95	□□□□□ -1.62

Retrieved 100 of 5,963 RNA–protein pairs in 20.3 ms