RNA–Protein interactions for RNA: YFL044C

OTU1, Transcript of Deubiquitylation enzyme that binds to the chaperone-ATPase Cdc48p, yeast

Gene OTU1, Length 906 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
OTU1	YFL044C	PDR3	P33200	976 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	YEL1	P34225	687 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	TSA1	P34760	196 aa	Known RBP	4.07	□□□□□ -1.76
OTU1	YFL044C	KDX1	P36005	433 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	CKB2	P38930	258 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	NAB3	P38996	802 aa	Known RBP RIP-Chip data	4.07	□□□□□ -1.76	not detected
OTU1	YFL044C	ZRG8	P40021	1076 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	CEP3	P40969	608 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	VTC2	P43585	828 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	ASN1	P49089	572 aa	Known RBP	4.07	□□□□□ -1.76
OTU1	YFL044C	RAI1	P53063	387 aa	Known RBP	4.07	□□□□□ -1.76
OTU1	YFL044C	ATG16	Q03818	150 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	EIS1	Q05050	843 aa	Known RBP	4.07	□□□□□ -1.76
OTU1	YFL044C	ATG33	Q06485	197 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	YDL121C	Q07541	149 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	SHS1	Q07657	551 aa		4.07	□□□□□ -1.76
OTU1	YFL044C	POL2	P21951	2222 aa	Known RBP	4.07	□□□□□ -1.76
OTU1	YFL044C	CET1	O13297	549 aa	Predicted RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	GAL10	P04397	699 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	RPL4A	P10664	362 aa	Known RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	HSF1	P10961	833 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	HMG1	P12683	1054 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	DAL7	P21826	554 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	STE11	P23561	717 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	URA1	P28272	314 aa	Predicted RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	DAL3	P32459	195 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	SAP190	P36123	1033 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	DUG2	P38149	878 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	OAF1	P39720	1047 aa	Predicted RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	BTT1	P40314	149 aa	Predicted RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	ECL1	P48235	211 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	RPL4B	P49626	362 aa	Known RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	UBA2	P52488	636 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	TAD1	P53065	400 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	YGR012W	P53206	393 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	NOG2	P53742	486 aa	Known RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	TOF1	P53840	1238 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	SNU56	Q03782	492 aa	Known RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	VMS1	Q04311	632 aa	Known RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	YDL057W	Q07379	328 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	YTM1	Q12024	460 aa	Predicted RBP	4.06	□□□□□ -1.76
OTU1	YFL044C	YPL150W	Q12152	901 aa		4.06	□□□□□ -1.76
OTU1	YFL044C	ASP3-2	P0CX77	362 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	ASP3-3	P0CX78	362 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	ASP3-4	P0CX79	362 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	ASP3-1	P0CZ17	362 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	RAD16	P31244	790 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	HOG1	P32485	435 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	TYE7	P33122	291 aa	Predicted RBP	4.05	□□□□□ -1.76
OTU1	YFL044C	STE13	P33894	931 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	LRG1	P35688	1017 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	YKR051W	P36142	418 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	IES1	P43579	692 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	ALY2	P47029	1046 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	CTF18	P49956	741 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	PUS2	P53167	370 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	YGR021W	P53212	290 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	PBP1	P53297	722 aa	Known RBP	4.05	□□□□□ -1.76
OTU1	YFL044C	YNR061C	P53747	219 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	MRPL22	P53881	309 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	IMP4	P53941	290 aa	Known RBP	4.05	□□□□□ -1.76
OTU1	YFL044C	MET14	Q02196	202 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	CEF1	Q03654	590 aa	Predicted RBP	4.05	□□□□□ -1.76
OTU1	YFL044C	TMN2	Q04562	672 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	YDR338C	Q05497	695 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	BSP1	Q06604	576 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	YPL277C	Q08989	487 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	TAF10	Q12030	206 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	YDL177C	Q12257	170 aa		4.05	□□□□□ -1.76
OTU1	YFL044C	HIS4	P00815	799 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	GAL1	P04385	528 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	RPL19A	P0CX82	189 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	RPL19B	P0CX83	189 aa	Predicted RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	NAT1	P12945	854 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	GPI10	P30777	616 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	SHE3	P38272	425 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	LAM1	P38851	1228 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	IES5	P40060	125 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	MND2	P40577	368 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	SHR5	P41912	237 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	DUG1	P43616	481 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	PIL1	P53252	339 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	SNP1	Q00916	300 aa	Predicted RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	SVL3	Q03088	825 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	HER2	Q03557	464 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	ROT1	Q03691	256 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	LRS4	Q04087	347 aa	Known RBP	4.04	□□□□□ -1.76
OTU1	YFL044C	GYL1	Q04322	720 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	CDD1	Q06549	142 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	CDA1	Q06702	301 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	YPQ1	Q12010	308 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	HFA1	P32874	2273 aa		4.04	□□□□□ -1.76
OTU1	YFL044C	RPP2A	P05319	106 aa	Known RBP	4.03	□□□□□ -1.76
OTU1	YFL044C	FPR1	P20081	114 aa	Known RBP	4.03	□□□□□ -1.76
OTU1	YFL044C	SIR1	P21691	654 aa		4.03	□□□□□ -1.76
OTU1	YFL044C	AEP2	P22136	580 aa		4.03	□□□□□ -1.76
OTU1	YFL044C	RPA135	P22138	1203 aa	Known RBP	4.03	□□□□□ -1.76
OTU1	YFL044C	PPH22	P23595	377 aa		4.03	□□□□□ -1.76
OTU1	YFL044C	YCL002C	P25565	263 aa		4.03	□□□□□ -1.76
OTU1	YFL044C	RPD3	P32561	433 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 28.1 ms