RNA–Protein interactions for RNA: YDR213W

UPC2, Transcript of Sterol regulatory element binding protein, yeast

Gene UPC2, Length 2,742 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
UPC2	YDR213W	FCY21	P40039	528 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	PEP8	P40335	379 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	SDS3	P40505	327 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	RTT101	P47050	842 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	RPT4	P53549	437 aa	Known RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	KTR5	P53966	522 aa	Predicted RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	RPN4	Q03465	531 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	GLO2	Q05584	274 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	DNL4	Q08387	944 aa	Predicted RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	SNX3	Q08826	162 aa	Known RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	FLC1	Q08967	793 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	LDB17	Q12342	491 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	DPH6	Q12429	685 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	ATG11	Q12527	1178 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	CYB2	P00175	591 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	ATP2	P00830	511 aa	Known RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	PDE2	P06776	526 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	PEX6	P33760	1030 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	YHR020W	P38708	688 aa	Known RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	GDH3	P39708	457 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	UTP18	P40362	594 aa	Predicted RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	YGR111W	P53265	400 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	RPA49	Q01080	415 aa	Predicted RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	SWP1	Q02795	286 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	ADI1	Q03677	179 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	DTD1	Q07648	150 aa	Known RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	NTG2	Q08214	380 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	GYP1	Q08484	637 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	PSY3	Q12318	242 aa		4.36	□□□□□ -1.71
UPC2	YDR213W	TIF6	Q12522	245 aa	Known RBP	4.36	□□□□□ -1.71
UPC2	YDR213W	CBS2	P14905	389 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	CTR86	P25355	563 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	CDC20	P26309	610 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	AFG2	P32794	780 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	NTR2	P36118	322 aa	Predicted RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	GAA1	P39012	614 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	CCT3	P39077	534 aa	Known RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	LCB2	P40970	561 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	YFL012W	P43580	148 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	MET12	P46151	657 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	TAF12	Q03761	539 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	YDR222W	Q04925	415 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	COQ9	Q05779	260 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	RSB1	Q08417	382 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	RSA1	Q08932	381 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	RKM4	Q12504	494 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	COB	P00163	385 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	RPL6B	P05739	176 aa	Known RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	EST1	P17214	699 aa	Predicted RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	ADP1	P25371	1049 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	KIP2	P28743	706 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	RPC34	P32910	317 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	BCK2	P33306	851 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	PTC1	P35182	281 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	PHO89	P38361	574 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	SEC31	P38968	1273 aa	Known RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	FAA3	P39002	694 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	MSS2	P40990	351 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	VMA13	P41807	478 aa	Known RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	GCD10	P41814	478 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	GSM1	P42950	618 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	BRE2	P43132	505 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	IRC5	P43610	853 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	EFM3	P47163	339 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	PIP2	P52960	996 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	RAI1	P53063	387 aa	Known RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	DBP6	P53734	629 aa	Known RBP	4.35	□□□□□ -1.71
UPC2	YDR213W	MRPL13	Q02204	264 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	DML1	Q03652	475 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	ATG16	Q03818	150 aa		4.35	□□□□□ -1.71
UPC2	YDR213W	CCP1	P00431	361 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	MET17	P06106	444 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	LEU1	P07264	779 aa	Known RBP	4.34	□□□□□ -1.71
UPC2	YDR213W	RPL8A	P17076	256 aa	Known RBP	4.34	□□□□□ -1.71
UPC2	YDR213W	CKA2	P19454	339 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	URA7	P28274	579 aa	Known RBP	4.34	□□□□□ -1.71
UPC2	YDR213W	TFC1	P32367	649 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	HCS1	P34243	683 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	HXT5	P38695	592 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	RRN7	P40992	514 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	CWC25	P53854	179 aa	Known RBP	4.34	□□□□□ -1.71
UPC2	YDR213W	ERB1	Q04660	807 aa	Known RBP	4.34	□□□□□ -1.71
UPC2	YDR213W	DUS4	Q06063	367 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	UBX5	Q06682	500 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	IWR1	Q07532	353 aa	Predicted RBP	4.34	□□□□□ -1.71
UPC2	YDR213W	ENT4	Q07872	247 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	YDR018C	Q12185	396 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	REC8	Q12188	680 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	RIF1	P29539	1916 aa		4.34	□□□□□ -1.71
UPC2	YDR213W	GPM1	P00950	247 aa	Known RBP	4.34	□□□□□ -1.72
UPC2	YDR213W	SNF1	P06782	633 aa	Known RBP	4.34	□□□□□ -1.72
UPC2	YDR213W	SWI5	P08153	709 aa		4.34	□□□□□ -1.72
UPC2	YDR213W	SPE1	P08432	466 aa		4.34	□□□□□ -1.72
UPC2	YDR213W	GCD11	P32481	527 aa	Known RBP	4.34	□□□□□ -1.72
UPC2	YDR213W	DUT1	P33317	147 aa		4.34	□□□□□ -1.72
UPC2	YDR213W	MDJ1	P35191	511 aa		4.34	□□□□□ -1.72
UPC2	YDR213W	GLY1	P37303	387 aa	Known RBP	4.34	□□□□□ -1.72
UPC2	YDR213W	MGE1	P38523	228 aa		4.34	□□□□□ -1.72
UPC2	YDR213W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.34	□□□□□ -1.72	not detected
UPC2	YDR213W	SWD1	P39706	426 aa		4.34	□□□□□ -1.72

Retrieved 100 of 5,963 RNA–protein pairs in 14.3 ms