RNA–Protein interactions for RNA: ENST00000599848.5

UPF1-207, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 1 (best) BASIC

Gene UPF1, Length 5,311 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-207ENST00000599848 NUCKS1Q9H1E3 243 aaKnown RBP22.78■■□□□ 1.24
UPF1-207ENST00000599848 PEG3Q9GZU2 1588 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 GEN1Q17RS7 908 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 TNNC2P02585 160 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 DCUN1D2Q6PH85 259 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 REXO1Q8N1G1 1221 aaKnown RBP22.78■■□□□ 1.24
UPF1-207ENST00000599848 VAV2P52735 878 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 CCDC6Q16204 474 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 KRT27Q7Z3Y8 459 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 PFDN4Q9NQP4 134 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 LEMD3Q9Y2U8 911 aa22.78■■□□□ 1.24
UPF1-207ENST00000599848 EXOC3O60645 756 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 GNA14O95837 355 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 CHST3Q7LGC8 479 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 MAPKAPK5Q8IW41 473 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 B4E1Z4 1266 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 CD19P15391 556 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 CALCRLQ16602 461 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 GALNT17Q6IS24 598 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 TIGD1Q96MW7 591 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 PCDHB13Q9Y5F0 798 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 PLEKHG3A1L390 1219 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 ACTN4O43707 911 aaKnown RBP22.77■■□□□ 1.24
UPF1-207ENST00000599848 TTC38Q5R3I4 469 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 PKNOX2Q96KN3 472 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 LRFN2Q9ULH4 789 aa22.77■■□□□ 1.24
UPF1-207ENST00000599848 N4BP1O75113 896 aaKnown RBP22.77■■□□□ 1.23
UPF1-207ENST00000599848 FOSP01100 380 aaPredicted RBP22.77■■□□□ 1.23
UPF1-207ENST00000599848 ZNF365Q70YC5 407 aa22.77■■□□□ 1.23
UPF1-207ENST00000599848 PROCA1Q8NCQ7 364 aaPredicted RBP22.77■■□□□ 1.23
UPF1-207ENST00000599848 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP22.77■■□□□ 1.231e-6■□□□□ 9.6
UPF1-207ENST00000599848 KRT10P13645 584 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 HSPA4P34932 840 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 TPD52P55327 224 aaPredicted RBP22.76■■□□□ 1.23
UPF1-207ENST00000599848 ZNF174Q15697 407 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 MYCT1Q8N699 235 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 KBTBD3Q8NAB2 608 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 TGFBRAP1Q8WUH2 860 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 TBC1D32Q96NH3 1257 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 NUP153P49790 1475 aaKnown RBP22.76■■□□□ 1.23
UPF1-207ENST00000599848 KRT19P08727 400 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 SLFN12Q8IYM2 578 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 TXKP42681 527 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 CTSWP56202 376 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 CCDC93Q567U6 631 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 RPS6KC1Q96S38 1066 aa22.76■■□□□ 1.23
UPF1-207ENST00000599848 V9GY48 417 aaPredicted RBP22.76■■□□□ 1.23
UPF1-207ENST00000599848 KRT9P35527 623 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 ASIC2Q16515 512 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 PIK3AP1Q6ZUJ8 805 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 C16orf45Q96MC5 204 aaPredicted RBP22.75■■□□□ 1.23
UPF1-207ENST00000599848 CNPY2Q9Y2B0 182 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 RABGAP1Q9Y3P9 1069 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 IREB2P48200 963 aaKnown RBP22.75■■□□□ 1.23
UPF1-207ENST00000599848 ITIH3Q06033 890 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 C20orf194Q5TEA3 1177 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 AOPEPQ8N6M6 819 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 SWAP70Q9UH65 585 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 PTGS1P23219 599 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 ANO6Q4KMQ2 910 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 GDPD2Q9HCC8 539 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 DACT1Q9NYF0 836 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 NCAPG2Q86XI2 1143 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 TCEANC2Q96MN5 208 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 PNMA3Q9UL41 463 aa22.75■■□□□ 1.23
UPF1-207ENST00000599848 CUTAO60888 179 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 BBOX1O75936 387 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 A1BGP04217 495 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 PLCB4Q15147 1175 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 CCDC184Q52MB2 194 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 SYT1P21579 422 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 CERKLQ49MI3 558 aaPredicted RBP22.74■■□□□ 1.23
UPF1-207ENST00000599848 ZNF449Q6P9G9 518 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 XDHP47989 1333 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 PPFIA3O75145 1194 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 PPP2R5AQ15172 486 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 BIVM-ERCC5R4GMW8 1640 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 TUBB2AQ13885 445 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 TUBB2BQ9BVA1 445 aa22.74■■□□□ 1.23
UPF1-207ENST00000599848 FBLN1P23142 703 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 HERC4Q5GLZ8 1057 aaPredicted RBP22.73■■□□□ 1.23
UPF1-207ENST00000599848 ZFYVE16Q7Z3T8 1539 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 TBC1D8BQ0IIM8 1120 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 DAAM2Q86T65 1068 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 BBS5Q8N3I7 341 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 SNX21Q969T3 373 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 TFAP4Q01664 338 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 USH1GQ495M9 461 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 NKIRAS1Q9NYS0 192 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 HESX1Q9UBX0 185 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 ZNF569Q5MCW4 686 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 RTKN2Q8IZC4 609 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 CDHR1Q96JP9 859 aa22.73■■□□□ 1.23
UPF1-207ENST00000599848 ALAS1P13196 640 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 MYL5Q02045 173 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 RAB3IPQ96QF0 476 aaPredicted RBP22.72■■□□□ 1.23
UPF1-207ENST00000599848 PTPREP23469 700 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 METTL13Q8N6R0 699 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 MED10Q9BTT4 135 aa22.72■■□□□ 1.23
UPF1-207ENST00000599848 UTP18Q9Y5J1 556 aaKnown RBP eCLIP22.72■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms