RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 PCP11498 1178 aaKnown RBP18.84■□□□□ 0.61
COL4A1-204ENST00000543140 USP5P45974 858 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 KIAA2012Q0VF49 1180 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 TROAPQ12815 778 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 DRC7Q8IY82 874 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 JMYQ8N9B5 988 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 VPS54Q9P1Q0 977 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 KIAA1468Q9P260 1216 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 ARPP21Q9UBL0 812 aaPredicted RBP18.84■□□□□ 0.61
COL4A1-204ENST00000543140 MAST2Q6P0Q8 1798 aa18.84■□□□□ 0.61
COL4A1-204ENST00000543140 SLC3A2P08195 630 aaKnown RBP18.83■□□□□ 0.61
COL4A1-204ENST00000543140 CRY2Q49AN0 593 aa18.83■□□□□ 0.61
COL4A1-204ENST00000543140 KRT27Q7Z3Y8 459 aa18.83■□□□□ 0.61
COL4A1-204ENST00000543140 SHISA4Q96DD7 197 aa18.83■□□□□ 0.61
COL4A1-204ENST00000543140 LAMB1P07942 1786 aa18.83■□□□□ 0.61
COL4A1-204ENST00000543140 TSPY2A6NKD2 308 aa18.83■□□□□ 0.6
COL4A1-204ENST00000543140 BECN2A8MW95 431 aa18.83■□□□□ 0.6
COL4A1-204ENST00000543140 ORC4O43929 436 aa18.83■□□□□ 0.6
COL4A1-204ENST00000543140 SYKP43405 635 aa18.83■□□□□ 0.6
COL4A1-204ENST00000543140 DDR1Q08345 913 aa18.83■□□□□ 0.6
COL4A1-204ENST00000543140 SPECC1Q5M775 1068 aa18.83■□□□□ 0.6
COL4A1-204ENST00000543140 RNF26Q9BY78 433 aaPredicted RBP18.83■□□□□ 0.6
COL4A1-204ENST00000543140 BRWD3Q6RI45 1802 aa18.83■□□□□ 0.6
COL4A1-204ENST00000543140 ZNF75DP51815 510 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 PDE4BQ07343 736 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 FUT2Q10981 343 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 ZRSR1Q15695 479 aaKnown RBP18.82■□□□□ 0.6
COL4A1-204ENST00000543140 PKN1Q16512 942 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 SLC27A3Q5K4L6 730 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 FOXP1Q9H334 677 aaPredicted RBP18.82■□□□□ 0.6
COL4A1-204ENST00000543140 DPCR1Q3MIW9 517 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 SBK1Q52WX2 424 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 DHX40Q8IX18 779 aaKnown RBP18.82■□□□□ 0.6
COL4A1-204ENST00000543140 PIBF1Q8WXW3 757 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 DYNLL2Q96FJ2 89 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 RBM17Q96I25 401 aaKnown RBP18.82■□□□□ 0.6
COL4A1-204ENST00000543140 KIAA1551Q9HCM1 1747 aa18.82■□□□□ 0.6
COL4A1-204ENST00000543140 PPP2R5BQ15173 497 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 ISM2Q6H9L7 571 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 PLA2G4DQ86XP0 818 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 CEP57L1Q8IYX8 460 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 KCNF1Q9H3M0 494 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 CABP5Q9NP86 173 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 NRBP1Q9UHY1 535 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 PCDHB6Q9Y5E3 794 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 PTGS1P23219 599 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.81■□□□□ 0.6
COL4A1-204ENST00000543140 AOPEPQ8N6M6 819 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 TGFBRAP1Q8WUH2 860 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 CD209Q9NNX6 404 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 EIF4ENIF1Q9NRA8 985 aaKnown RBP18.81■□□□□ 0.6
COL4A1-204ENST00000543140 GGA1Q9UJY5 639 aa18.81■□□□□ 0.6
COL4A1-204ENST00000543140 FAM205CA6NFA0 338 aa18.8■□□□□ 0.6
COL4A1-204ENST00000543140 GOLGA6L6A8MZA4 724 aa18.8■□□□□ 0.6
COL4A1-204ENST00000543140 PROM2Q8N271 834 aa18.8■□□□□ 0.6
COL4A1-204ENST00000543140 DLEC1Q9Y238 1755 aa18.8■□□□□ 0.6
COL4A1-204ENST00000543140 GRIN1Q05586 938 aa18.8■□□□□ 0.6
COL4A1-204ENST00000543140 RESP18Q5W5W9 173 aa18.8■□□□□ 0.6
COL4A1-204ENST00000543140 RBM28Q9NW13 759 aaKnown RBP18.8■□□□□ 0.6
COL4A1-204ENST00000543140 MKRN1Q9UHC7 482 aaKnown RBP18.8■□□□□ 0.6
COL4A1-204ENST00000543140 HPSEQ9Y251 543 aa18.8■□□□□ 0.6
COL4A1-204ENST00000543140 PRPF3O43395 683 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 CUTAO60888 179 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 CALM1P0DP23 149 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 CALM2P0DP24 149 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 CALM3P0DP25 149 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 TFAP4Q01664 338 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 RILPL1Q5EBL4 403 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 C12orf60Q5U649 245 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 KRI1Q8N9T8 703 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 POLLQ9UGP5 575 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 SAP30BPQ9UHR5 308 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 POLRMTO00411 1230 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 DDAH1O94760 285 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 BAG3O95817 575 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 GSTO1P78417 241 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 TXNRD1Q16881 649 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 TMTC3Q6ZXV5 915 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 CCDC186Q7Z3E2 898 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 MAPKAPK5Q8IW41 473 aa18.79■□□□□ 0.6
COL4A1-204ENST00000543140 SRBD1Q8N5C6 995 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 CTCFLQ8NI51 663 aaPredicted RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 NOL10Q9BSC4 688 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 NAT10Q9H0A0 1025 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 R3HCC1Q9Y3T6 440 aaKnown RBP18.79■□□□□ 0.6
COL4A1-204ENST00000543140 C6orf229H3BNL8 230 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 XBP1P17861 261 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 ATP2B4P23634 1241 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 LONRF3Q496Y0 759 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 EARS2Q5JPH6 523 aaKnown RBP18.78■□□□□ 0.6
COL4A1-204ENST00000543140 RCSD1Q6JBY9 416 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 SLC44A5Q8NCS7 719 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 CLIP2Q9UDT6 1046 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 KCNH3Q9ULD8 1083 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 PYCARDQ9ULZ3 195 aa18.78■□□□□ 0.6
COL4A1-204ENST00000543140 BBOX1O75936 387 aa18.77■□□□□ 0.6
COL4A1-204ENST00000543140 PNOCQ13519 176 aa18.77■□□□□ 0.6
COL4A1-204ENST00000543140 TMED8Q6PL24 325 aaPredicted RBP18.77■□□□□ 0.6
COL4A1-204ENST00000543140 C15orf52Q6ZUT6 534 aaKnown RBP18.77■□□□□ 0.6
COL4A1-204ENST00000543140 PHF20Q9BVI0 1012 aa18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms