RNA–Protein interactions for RNA: ENST00000542002.5

YBX3-212, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 952 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-212ENST00000542002 ATP8A2Q9NTI2 1148 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 SERPINB13Q9UIV8 391 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 SIPA1L1O43166 1804 aa11.72□□□□□ -0.53
YBX3-212ENST00000542002 A0A0G2JLL6 359 aaPredicted RBP11.71□□□□□ -0.53
YBX3-212ENST00000542002 TRIM75PA6NK02 468 aa11.71□□□□□ -0.53
YBX3-212ENST00000542002 GPAA1O43292 621 aa11.71□□□□□ -0.53
YBX3-212ENST00000542002 ALDH1A1P00352 501 aa11.71□□□□□ -0.53
YBX3-212ENST00000542002 GUCY1A2P33402 732 aa11.71□□□□□ -0.53
YBX3-212ENST00000542002 C12orf60Q5U649 245 aa11.71□□□□□ -0.53
YBX3-212ENST00000542002 CCDC129Q6ZRS4 1044 aa11.71□□□□□ -0.53
YBX3-212ENST00000542002 PRRT2Q7Z6L0 340 aaPredicted RBP11.71□□□□□ -0.53
YBX3-212ENST00000542002 EPB41L4AQ9HCS5 686 aaPredicted RBP11.71□□□□□ -0.53
YBX3-212ENST00000542002 AK9Q5TCS8 1911 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 CDK5RAP2Q96SN8 1893 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 USP17L5A8MUK1 530 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 GH2P01242 217 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 CERKLQ49MI3 558 aaPredicted RBP11.7□□□□□ -0.54
YBX3-212ENST00000542002 OTUD7BQ6GQQ9 843 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 SKAP1Q86WV1 359 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 TNS4Q8IZW8 715 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 ZNF280CQ8ND82 737 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 FAM227BQ96M60 508 aa11.7□□□□□ -0.54
YBX3-212ENST00000542002 PATL2C9JE40 543 aaKnown RBP11.69□□□□□ -0.54
YBX3-212ENST00000542002 PDHXO00330 501 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 NOM1Q5C9Z4 860 aaKnown RBP11.69□□□□□ -0.54
YBX3-212ENST00000542002 TREML2Q5T2D2 321 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 VPS53Q5VIR6 699 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 SAMD1Q6SPF0 538 aaPredicted RBP11.69□□□□□ -0.54
YBX3-212ENST00000542002 ANKRD23Q86SG2 305 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 SIAH1Q8IUQ4 282 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 RILPL2Q969X0 211 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 WDR18Q9BV38 432 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 TRIM34Q9BYJ4 488 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 ZBTB21Q9ULJ3 1066 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 FOCADQ5VW36 1801 aa11.69□□□□□ -0.54
YBX3-212ENST00000542002 A0A0D9SFI3 127 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 TRIM6-TRIM34B2RNG4 842 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 FKTNO75072 461 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 ASNSP08243 561 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 CYP2C8P10632 490 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 GSPT1P15170 499 aaKnown RBP11.68□□□□□ -0.54
YBX3-212ENST00000542002 SDSP20132 328 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 CDK8P49336 464 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 HMGCS2P54868 508 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 TAF1CQ15572 869 aaPredicted RBP11.68□□□□□ -0.54
YBX3-212ENST00000542002 ABCB5Q2M3G0 1257 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 SBK1Q52WX2 424 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 GIMAP6Q6P9H5 292 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 GADL1Q6ZQY3 521 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 IFNL3Q8IZI9 196 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 ACER1Q8TDN7 264 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 EMILIN3Q9NT22 766 aa11.68□□□□□ -0.54
YBX3-212ENST00000542002 MINDY4BA8MYZ0 360 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 TLR2O60603 784 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 APPP05067 770 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 AKR1B1P15121 316 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 BACE1P56817 501 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 NMIQ13287 307 aaPredicted RBP11.67□□□□□ -0.54
YBX3-212ENST00000542002 MTMR2Q13614 643 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 SEPT2Q15019 361 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 RAB3GAP1Q15042 981 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 LRRFIP1Q32MZ4 808 aaKnown RBP11.67□□□□□ -0.54
YBX3-212ENST00000542002 SH3D19Q5HYK7 790 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 C17orf99Q6UX52 265 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 C16orf86Q6ZW13 317 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 FASTKD5Q7L8L6 764 aaKnown RBP11.67□□□□□ -0.54
YBX3-212ENST00000542002 ZNF589Q86UQ0 364 aaPredicted RBP11.67□□□□□ -0.54
YBX3-212ENST00000542002 STK11IPQ8N1F8 1099 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.67□□□□□ -0.54
YBX3-212ENST00000542002 MCOLN1Q9GZU1 580 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 ZFYVE28Q9HCC9 887 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 ZCCHC17Q9NP64 241 aaKnown RBP11.67□□□□□ -0.54
YBX3-212ENST00000542002 INCENPQ9NQS7 918 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 CPA4Q9UI42 421 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 TACC3Q9Y6A5 838 aa11.67□□□□□ -0.54
YBX3-212ENST00000542002 DDX60LQ5H9U9 1706 aaKnown RBP11.66□□□□□ -0.54
YBX3-212ENST00000542002 ADGRA2Q96PE1 1338 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 A0A1W2PRG0 241 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 GNAT2P19087 354 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 CTGFP29279 349 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 SP3Q02447 781 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 MCMDC2Q4G0Z9 681 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 POTEEQ6S8J3 1075 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 CLEC10AQ8IUN9 316 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 CD99L2Q8TCZ2 262 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 HELLSQ9NRZ9 838 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 GINM1Q9NU53 330 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 SWAP70Q9UH65 585 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 LAMB1P07942 1786 aa11.66□□□□□ -0.54
YBX3-212ENST00000542002 PHIPQ8WWQ0 1821 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 CASP8AP2Q9UKL3 1982 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 USP17L10C9JJH3 530 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 KIAA1755Q5JYT7 1200 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 TTC22Q5TAA0 569 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 TBC1D2Q9BYX2 928 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 ARHGAP39Q9C0H5 1083 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 IL25Q9H293 177 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 AS3MTQ9HBK9 375 aa11.65□□□□□ -0.54
YBX3-212ENST00000542002 ARPP21Q9UBL0 812 aaPredicted RBP11.65□□□□□ -0.54
YBX3-212ENST00000542002 AGTPBP1Q9UPW5 1226 aa11.65□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms