RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 SPDYE3A6NKU9 549 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 FECHP22830 423 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 NNTQ13423 1086 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 MKRN4PQ13434 485 aaPredicted RBP13.95□□□□□ -0.18
USP3-203ENST00000538686 STK38Q15208 465 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 AMOTQ4VCS5 1084 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 LRRC23Q53EV4 343 aaPredicted RBP13.95□□□□□ -0.18
USP3-203ENST00000538686 SLC4A10Q6U841 1118 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 GALNT15Q8N3T1 639 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 GPATCH3Q96I76 525 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 YIPF3Q9GZM5 350 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 UBN2Q6ZU65 1347 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 A6NHS1 94 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 SLC4A2P04920 1241 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 SSBP05455 408 aaKnown RBP eCLIP13.95□□□□□ -0.18
USP3-203ENST00000538686 FAM163BP0C2L3 166 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 CMA1P23946 247 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 MYO1EQ12965 1108 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 STK3Q13188 491 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 PPP4R3AQ6IN85 833 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 PLPPR3Q6T4P5 718 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 RAD9BQ6WBX8 426 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 ARFGAP2Q8N6H7 521 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 RHPN1Q8TCX5 695 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 TBC1D31Q96DN5 1066 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 KDM4CQ9H3R0 1056 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 IL1RAPL2Q9NP60 686 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 BLOC1S6Q9UL45 172 aa13.95□□□□□ -0.18
USP3-203ENST00000538686 CHL1O00533 1208 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 ZSCAN9O15535 394 aaPredicted RBP13.94□□□□□ -0.18
USP3-203ENST00000538686 SCTRP47872 440 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 EPHB4P54760 987 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 SFSWAPQ12872 951 aaKnown RBP13.94□□□□□ -0.18
USP3-203ENST00000538686 NCAPH2Q6IBW4 605 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 TMTC1Q8IUR5 882 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 CNGA4Q8IV77 575 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 LINC00301Q8NCQ3 95 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 ZNF526Q8TF50 670 aaPredicted RBP13.94□□□□□ -0.18
USP3-203ENST00000538686 CNKSR1Q969H4 720 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 EVI5LQ96CN4 794 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 BICD1Q96G01 975 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 POLR3EQ9NVU0 708 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 PXDNLA1KZ92 1463 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 B4DLN1 442 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 PSMD14O00487 310 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 MTF1Q14872 753 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 ACCSLQ4AC99 568 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 GLE1Q53GS7 698 aaKnown RBP13.94□□□□□ -0.18
USP3-203ENST00000538686 TTMPQ5BVD1 217 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 EPAS1Q99814 870 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 TSGA10Q9BZW7 698 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 FTOQ9C0B1 505 aaKnown RBP eCLIP13.94□□□□□ -0.18
USP3-203ENST00000538686 SAR1BQ9Y6B6 198 aa13.94□□□□□ -0.18
USP3-203ENST00000538686 ADGRB3O60242 1522 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 NUTM2FA1L443 756 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 ANP32DO95626 131 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 MDH1P40925 334 aaKnown RBP13.93□□□□□ -0.18
USP3-203ENST00000538686 ELF3P78545 371 aaPredicted RBP13.93□□□□□ -0.18
USP3-203ENST00000538686 HDLBPQ00341 1268 aaKnown RBP13.93□□□□□ -0.18
USP3-203ENST00000538686 DYNC1I2Q13409 638 aaKnown RBP13.93□□□□□ -0.18
USP3-203ENST00000538686 NUTM2DQ5VT03 806 aaPredicted RBP13.93□□□□□ -0.18
USP3-203ENST00000538686 NUTM2GQ5VZR2 741 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 NUTM2AQ8IVF1 878 aaPredicted RBP13.93□□□□□ -0.18
USP3-203ENST00000538686 CAVIN3Q969G5 261 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 CYFIP2Q96F07 1278 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 CDC5LQ99459 802 aaKnown RBP13.93□□□□□ -0.18
USP3-203ENST00000538686 GORASP1Q9BQQ3 440 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 NUP58Q9BVL2 599 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 ATP7BP35670 1465 aa13.93□□□□□ -0.18
USP3-203ENST00000538686 CFAP73A6NFT4 308 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 GSTA1P08263 222 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 PYGBP11216 843 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 ZNF18P17022 549 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 RANBP1P43487 201 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 CUL3Q13618 768 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 SAFB2Q14151 953 aaKnown RBP eCLIP13.92□□□□□ -0.18
USP3-203ENST00000538686 KIAA0753Q2KHM9 967 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 SYNE3Q6ZMZ3 975 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 SND1Q7KZF4 910 aaKnown RBP eCLIP13.92□□□□□ -0.18
USP3-203ENST00000538686 ELOA2Q8IYF1 753 aaPredicted RBP13.92□□□□□ -0.18
USP3-203ENST00000538686 ATRIPQ8WXE1 791 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 STAMBPL1Q96FJ0 436 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 GOPCQ9HD26 462 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 ZFATQ9P243 1243 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 ARHGEF28Q8N1W1 1705 aaKnown RBP13.92□□□□□ -0.18
USP3-203ENST00000538686 STXBP3O00186 592 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 SPTLC2O15270 562 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 NR1D1P20393 614 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 TNFRSF8P28908 595 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 CNGA1P29973 690 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 ITIH3Q06033 890 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 NR1I3Q14994 352 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 PAPD7Q5XG87 772 aaKnown RBP13.92□□□□□ -0.18
USP3-203ENST00000538686 RNPC3Q96LT9 517 aaKnown RBP13.92□□□□□ -0.18
USP3-203ENST00000538686 BAIAP2L1Q9UHR4 511 aa13.92□□□□□ -0.18
USP3-203ENST00000538686 HMGB1P1B2RPK0 211 aaPredicted RBP13.91□□□□□ -0.18
USP3-203ENST00000538686 RNF8O76064 485 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 HMOX1P09601 288 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 CC2D2BQ6DHV5 1058 aa13.91□□□□□ -0.18
USP3-203ENST00000538686 CD302Q8IX05 232 aa13.91□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 504.7 ms