RNA–Protein interactions for RNA: ENST00000485627.1

CTSA-208, Transcript of cathepsin A, human

TSL 3

Gene CTSA, Length 695 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTSA-208	ENST00000485627	TNPO1	Q92973	898 aa	Known RBP	11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	ZSCAN10	Q96SZ4	725 aa	Predicted RBP	11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	ZKSCAN3	Q9BRR0	538 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	LY9	Q9HBG7	655 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	GPHN	Q9NQX3	736 aa	Predicted RBP	11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	TACC3	Q9Y6A5	838 aa		11.16	□□□□□ -0.62
CTSA-208	ENST00000485627	TNKS	O95271	1327 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	GOLGA8A	A7E2F4	631 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	NFKBIE	O00221	500 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	STX6	O43752	255 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	CDKL5	O76039	1030 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	EIF6	P56537	245 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	ST3GAL1	Q11201	340 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	DLGAP5	Q15398	846 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	IFIT1B	Q5T764	474 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	LARP1B	Q659C4	914 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	APOA5	Q6Q788	366 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	CATIP	Q7Z7H3	387 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	SGMS1	Q86VZ5	419 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	DYNLL2	Q96FJ2	89 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	TRIM34	Q9BYJ4	488 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	OSBPL5	Q9H0X9	879 aa	Predicted RBP	11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	NCOA5	Q9HCD5	579 aa	Known RBP	11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	BRPF3	Q9ULD4	1205 aa		11.15	□□□□□ -0.62
CTSA-208	ENST00000485627	ROBO3	Q96MS0	1386 aa		11.15	□□□□□ -0.63
CTSA-208	ENST00000485627	CCDC196	A0A1B0GTZ2	297 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	WDHD1	O75717	1129 aa	Predicted RBP	11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	BRD1	O95696	1058 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	TSPY3	P0CV98	308 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	TSPY8	P0CW00	308 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	LMNB1	P20700	586 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	PTMS	P20962	102 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	MMP14	P50281	582 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	PLCD1	P51178	756 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	TFAP4	Q01664	338 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	CXCL9	Q07325	125 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	FAM47A	Q5JRC9	791 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	C16orf86	Q6ZW13	317 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	MICU3	Q86XE3	530 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	ATP6V1D	Q9Y5K8	247 aa		11.14	□□□□□ -0.63
CTSA-208	ENST00000485627	BAZ2A	Q9UIF9	1905 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	PTPDC1	A2A3K4	754 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	VPS37C	A5D8V6	355 aa	Predicted RBP	11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	DDX11L8	A8MPP1	907 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627		H3BQV1	296 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	SMIM22	K7EJ46	135 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	MYO1B	O43795	1136 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	JAK2	O60674	1132 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	CALM1	P0DP23	149 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	CALM2	P0DP24	149 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	CALM3	P0DP25	149 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	SYT1	P21579	422 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	RPS12	P25398	132 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	CDK8	P49336	464 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	LBX1	P52954	281 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	RCAN1	P53805	252 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	PKP1	Q13835	747 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	PPP2R5B	Q15173	497 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	RAB11FIP4	Q86YS3	637 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	NSUN7	Q8NE18	718 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	NKX2-3	Q8TAU0	364 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	NUP133	Q8WUM0	1156 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	DDX11	Q96FC9	970 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	GML	Q99445	158 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	IDI2	Q9BXS1	227 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	DHX36	Q9H2U1	1008 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	DDX4	Q9NQI0	724 aa	Known RBP	11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	SWAP70	Q9UH65	585 aa		11.13	□□□□□ -0.63
CTSA-208	ENST00000485627	NAV1	Q8NEY1	1877 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	SCN9A	Q15858	1988 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	ZSCAN22	P10073	491 aa	Predicted RBP	11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	MCM4	P33991	863 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	CACNB1	Q02641	598 aa	Predicted RBP	11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	EVX2	Q03828	476 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	RTN1	Q16799	776 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	CCDC144CP	Q8IYA2	1237 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	ZNF654	Q8IZM8	581 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	ENAH	Q8N8S7	591 aa	Predicted RBP	11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	SMARCC2	Q8TAQ2	1214 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	TDRD3	Q9H7E2	651 aa	Known RBP	11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	KAT14	Q9H8E8	782 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	CREBZF	Q9NS37	354 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	SERPINB13	Q9UIV8	391 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	HPS5	Q9UPZ3	1129 aa		11.12	□□□□□ -0.63
CTSA-208	ENST00000485627	LAMB1	P07942	1786 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	ENTPD3	O75355	529 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	RXRA	P19793	462 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	RASA1	P20936	1047 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	ADD1	P35611	737 aa	Known RBP	11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	VEGFB	P49765	207 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	CACNB3	P54284	484 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	TCP10	Q12799	353 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	NFIA	Q12857	509 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	SEC23A	Q15436	765 aa		11.11	□□□□□ -0.63
CTSA-208	ENST00000485627	DGKH	Q86XP1	1220 aa		11.11	□□□□□ -0.63

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms