RNA–Protein interactions for RNA: ENST00000468300.5

BRCA1-208, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best) BASIC

Gene BRCA1, Length 3,273 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-208ENST00000468300 SMC3Q9UQE7 1217 aa9.7□□□□□ -0.86
BRCA1-208ENST00000468300 TNKSO95271 1327 aa9.7□□□□□ -0.86
BRCA1-208ENST00000468300 RASA1P20936 1047 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 TMEM67Q5HYA8 995 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 FAM47AQ5JRC9 791 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 GPATCH11Q8N954 259 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 ZBED3Q96IU2 234 aaPredicted RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 PRMT6Q96LA8 375 aaPredicted RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 ZSCAN10Q96SZ4 725 aaPredicted RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 TAOK3Q9H2K8 898 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 SHTN1A0MZ66 631 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 RXRAP19793 462 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 MCM4P33991 863 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 NOVP48745 357 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 CACNB3P54284 484 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 ESR2Q92731 530 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 IDI2Q9BXS1 227 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 OSBPL5Q9H0X9 879 aaPredicted RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 BCS1LQ9Y276 419 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 IFIT3O14879 490 aaKnown RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 STX6O43752 255 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 RANBP6O60518 1105 aaKnown RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 PPFIA3O75145 1194 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 BAG4O95429 457 aaKnown RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 PIAS4Q8N2W9 510 aaPredicted RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 FHDC1Q9C0D6 1143 aaPredicted RBP9.69□□□□□ -0.86
BRCA1-208ENST00000468300 DNAJC18Q9H819 358 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 SPON1Q9HCB6 807 aa9.69□□□□□ -0.86
BRCA1-208ENST00000468300 PTPDC1A2A3K4 754 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 GOLGA8BA8MQT2 603 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 UBE2Q2LH0YL09 131 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 ADD1P35611 737 aaKnown RBP9.68□□□□□ -0.86
BRCA1-208ENST00000468300 NBPF11Q86T75 865 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 NOL10Q9BSC4 688 aaKnown RBP9.68□□□□□ -0.86
BRCA1-208ENST00000468300 FZD9O00144 591 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 CDK8P49336 464 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 PICALMQ13492 652 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 CFAP100Q494V2 611 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 CDC37L1Q7L3B6 337 aa9.68□□□□□ -0.86
BRCA1-208ENST00000468300 DDTLA6NHG4 134 aaPredicted RBP9.67□□□□□ -0.86
BRCA1-208ENST00000468300 NPM3O75607 178 aaKnown RBP9.67□□□□□ -0.86
BRCA1-208ENST00000468300 ZSCAN22P10073 491 aaPredicted RBP9.67□□□□□ -0.86
BRCA1-208ENST00000468300 ANKS1AQ92625 1134 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 TCP11L1Q9NUJ3 509 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 COL2A1P02458 1487 aaPredicted RBP9.67□□□□□ -0.86
BRCA1-208ENST00000468300 CNTNAP1P78357 1384 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 SPDYE2BA6NHP3 402 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 SPDYE6P0CI01 402 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 FUT2Q10981 343 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 TROAPQ12815 778 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 WTAPQ15007 396 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 NIM1KQ8IY84 436 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 DDX11Q96FC9 970 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 TDRD3Q9H7E2 651 aaKnown RBP9.67□□□□□ -0.86
BRCA1-208ENST00000468300 PGAP2Q9UHJ9 254 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 MYO3BQ8WXR4 1341 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 PLIN4Q96Q06 1357 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 PDE4BQ07343 736 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 METTL16Q86W50 562 aaKnown RBP9.67□□□□□ -0.86
BRCA1-208ENST00000468300 MTMR14Q8NCE2 650 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 AGBL3Q8NEM8 1001 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 SHISA4Q96DD7 197 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 TOMM22Q9NS69 142 aa9.67□□□□□ -0.86
BRCA1-208ENST00000468300 ATRNL1Q5VV63 1379 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 IGKV6D-41A0A0C4DH26 115 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 EGFRP00533 1210 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 POLR3DP05423 398 aaPredicted RBP9.66□□□□□ -0.86
BRCA1-208ENST00000468300 SHMT1P34896 483 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 TFAP4Q01664 338 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 CCDC144CPQ8IYA2 1237 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 ZNF654Q8IZM8 581 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 MYH6P13533 1939 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 ZBTB43O43298 467 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 F13A1P00488 732 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 METAP2P50579 478 aaKnown RBP eCLIP9.66□□□□□ -0.86
BRCA1-208ENST00000468300 RCAN1P53805 252 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 MICU3Q86XE3 530 aa9.66□□□□□ -0.86
BRCA1-208ENST00000468300 WDR33Q9C0J8 1336 aaKnown RBP9.66□□□□□ -0.86
BRCA1-208ENST00000468300 LARP1BQ659C4 914 aaKnown RBP9.65□□□□□ -0.86
BRCA1-208ENST00000468300 GJB4Q9NTQ9 266 aa9.65□□□□□ -0.86
BRCA1-208ENST00000468300 SLC12A7Q9Y666 1083 aa9.65□□□□□ -0.86
BRCA1-208ENST00000468300 ZNF541Q9H0D2 1346 aa9.65□□□□□ -0.86
BRCA1-208ENST00000468300 ZNF280AP59817 542 aaPredicted RBP9.65□□□□□ -0.86
BRCA1-208ENST00000468300 SHROOM1Q2M3G4 852 aaPredicted RBP9.65□□□□□ -0.86
BRCA1-208ENST00000468300 AIFM3Q96NN9 605 aa9.65□□□□□ -0.86
BRCA1-208ENST00000468300 UBAC1Q9BSL1 405 aa9.65□□□□□ -0.86
BRCA1-208ENST00000468300 SYT17Q9BSW7 474 aa9.65□□□□□ -0.86
BRCA1-208ENST00000468300 EHD4Q9H223 541 aa9.65□□□□□ -0.86
BRCA1-208ENST00000468300 SLC3A2P08195 630 aaKnown RBP9.65□□□□□ -0.87
BRCA1-208ENST00000468300 YBX3P16989 372 aaKnown RBP eCLIP9.65□□□□□ -0.875e-6■■■□□ 15.8
BRCA1-208ENST00000468300 GUCY1A2P33402 732 aa9.65□□□□□ -0.87
BRCA1-208ENST00000468300 SLC35G1Q2M3R5 365 aa9.65□□□□□ -0.87
BRCA1-208ENST00000468300 TMTC2Q8N394 836 aa9.65□□□□□ -0.87
BRCA1-208ENST00000468300 FANCBQ8NB91 859 aa9.65□□□□□ -0.87
BRCA1-208ENST00000468300 NEDD1Q8NHV4 660 aa9.65□□□□□ -0.87
BRCA1-208ENST00000468300 PHKBQ93100 1093 aa9.65□□□□□ -0.87
BRCA1-208ENST00000468300 LMBRD1Q9NUN5 540 aa9.65□□□□□ -0.87
BRCA1-208ENST00000468300 MYH4Q9Y623 1939 aa9.64□□□□□ -0.87
BRCA1-208ENST00000468300 CCDC69A6NI79 296 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms