RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 PPP2R2CQ9Y2T4 447 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 CHD4Q14839 1912 aa11.2□□□□□ -0.62
CD44-206ENST00000415148 BTBD18B2RXH4 712 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 SLC5A1P13866 664 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 ADKP55263 362 aaKnown RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 FMR1Q06787 632 aaKnown RBP eCLIP11.19□□□□□ -0.62
CD44-206ENST00000415148 SPECC1LQ69YQ0 1117 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 DIS3L2Q8IYB7 885 aaKnown RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 SYNE4Q8N205 404 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 CRACR2BQ8N4Y2 399 aaPredicted RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 MNS1Q8NEH6 495 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 SPATA20Q8TB22 786 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 SMARCE1Q969G3 411 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 MED15Q96RN5 788 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 DESI2Q9BSY9 194 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 EPB41L4AQ9HCS5 686 aaPredicted RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 ASAP1Q9ULH1 1129 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 MYO5AQ9Y4I1 1855 aaKnown RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 ERICH2A1L162 156 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 GSG1L2A8MUP6 293 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 TFRCP02786 760 aaKnown RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 PRR29P0C7W0 189 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 CDK11BP21127 795 aaKnown RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 EVA1CP58658 441 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 MTF1Q14872 753 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 RTN1Q16799 776 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 TRMT44Q8IYL2 757 aaKnown RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 GRAMD1CQ8IYS0 662 aa11.19□□□□□ -0.62
CD44-206ENST00000415148 RNF41Q9H4P4 317 aaPredicted RBP11.19□□□□□ -0.62
CD44-206ENST00000415148 CYP19A1P11511 503 aaPredicted RBP11.18□□□□□ -0.62
CD44-206ENST00000415148 GPTP24298 496 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 MAP3K9P80192 1104 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 NR1I3Q14994 352 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 WTAPQ15007 396 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 UBXN6Q9BZV1 441 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 POLR2DO15514 142 aaKnown RBP11.18□□□□□ -0.62
CD44-206ENST00000415148 MBD4O95243 580 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 CASQ1P31415 396 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 CTDSPL2Q05D32 466 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 TMCO3Q6UWJ1 677 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 MAGEB6Q8N7X4 407 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 TC2NQ8N9U0 490 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 SERTAD1Q9UHV2 236 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 NFE2L3Q9Y4A8 694 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 BCORQ6W2J9 1755 aa11.18□□□□□ -0.62
CD44-206ENST00000415148 ABCA3Q99758 1704 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 NUP98P52948 1817 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 PLCD1P51178 756 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 KARSQ15046 597 aaKnown RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 TEX35Q5T0J7 233 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 CC2D1AQ6P1N0 951 aaPredicted RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 ZNF34Q8IZ26 560 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 GPR161Q8N6U8 529 aaKnown RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 PDILTQ8N807 584 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 FANCBQ8NB91 859 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 KIFC2Q96AC6 838 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 PANX2Q96RD6 677 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 NAA15Q9BXJ9 866 aaKnown RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 ZSWIM4Q9H7M6 989 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 MRPL44Q9H9J2 332 aaKnown RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 CCDC66A2RUB6 948 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 ACTN4O43707 911 aaKnown RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 BMP15O95972 392 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 XBP1P17861 261 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 OAS2P29728 719 aaKnown RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 GUCY1A2P33402 732 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 GNG11P61952 73 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 DHX58Q96C10 678 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 RNF26Q9BY78 433 aaPredicted RBP11.17□□□□□ -0.62
CD44-206ENST00000415148 ARMT1Q9H993 441 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 AATFQ9NY61 560 aaKnown RBP eCLIP11.17□□□□□ -0.62
CD44-206ENST00000415148 RAI14Q9P0K7 980 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 TACC3Q9Y6A5 838 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 ITGB4P16144 1822 aa11.17□□□□□ -0.62
CD44-206ENST00000415148 TNKS1BP1Q9C0C2 1729 aaKnown RBP11.16□□□□□ -0.62
CD44-206ENST00000415148 A0A1B0GTH6 734 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 SEMA3EO15041 775 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 IL6STP40189 918 aaPredicted RBP11.16□□□□□ -0.62
CD44-206ENST00000415148 ANAPC4Q9UJX5 808 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 KCNJ14Q9UNX9 436 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 PCDHB6Q9Y5E3 794 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 RTL9Q8NET4 1388 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 H3BQF6 201 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 TULP2O00295 520 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 TDO2P48775 406 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 TUBB4BP68371 445 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 TUBB2AQ13885 445 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 RASGRF1Q13972 1273 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 CTAGE1Q96RT6 745 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 TUBB2BQ9BVA1 445 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 PARD6BQ9BYG5 372 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 STRN4Q9NRL3 753 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 SAMSN1Q9NSI8 373 aaKnown RBP11.16□□□□□ -0.62
CD44-206ENST00000415148 MRFAP1Q9Y605 127 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 SLC4A4Q9Y6R1 1079 aa11.16□□□□□ -0.62
CD44-206ENST00000415148 XIRP1Q702N8 1843 aaKnown RBP11.15□□□□□ -0.62
CD44-206ENST00000415148 PPP2R3AQ06190 1150 aa11.15□□□□□ -0.62
CD44-206ENST00000415148 SPATA1Q5VX52 437 aa11.15□□□□□ -0.62
CD44-206ENST00000415148 JAKMIP3Q5VZ66 844 aa11.15□□□□□ -0.62
CD44-206ENST00000415148 USP49Q70CQ1 688 aa11.15□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.6 ms