RNA–Protein interactions for RNA: ENST00000372733.3

SDC4-201, Transcript of syndecan 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SDC4, Length 2,613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDC4-201ENST00000372733 ZNF512BQ96KM6 892 aaPredicted RBP18.69■□□□□ 0.58
SDC4-201ENST00000372733 CASP1P29466 404 aa18.69■□□□□ 0.58
SDC4-201ENST00000372733 CTSWP56202 376 aa18.69■□□□□ 0.58
SDC4-201ENST00000372733 APTXQ7Z2E3 356 aaKnown RBP18.69■□□□□ 0.58
SDC4-201ENST00000372733 DNAJC10Q8IXB1 793 aa18.69■□□□□ 0.58
SDC4-201ENST00000372733 TRIM22Q8IYM9 498 aa18.69■□□□□ 0.58
SDC4-201ENST00000372733 TRIML1Q8N9V2 468 aa18.69■□□□□ 0.58
SDC4-201ENST00000372733 ANKRD18BA2A2Z9 1011 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 TXLNAP40222 546 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 HLFQ16534 295 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 LONRF2Q1L5Z9 754 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 MAGEB6Q8N7X4 407 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 HELBQ8NG08 1087 aaPredicted RBP18.68■□□□□ 0.58
SDC4-201ENST00000372733 FOXP1Q9H334 677 aaPredicted RBP18.68■□□□□ 0.58
SDC4-201ENST00000372733 PUF60Q9UHX1 559 aaKnown RBP18.68■□□□□ 0.58
SDC4-201ENST00000372733 A0A087X0B3 334 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 FAM205CA6NFA0 338 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 H3BQF6 201 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 RBL2Q08999 1139 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 ALX1Q15699 326 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 ZBTB9Q96C00 473 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 SRPRBQ9Y5M8 271 aaKnown RBP18.68■□□□□ 0.58
SDC4-201ENST00000372733 ADGRG1Q9Y653 693 aa18.68■□□□□ 0.58
SDC4-201ENST00000372733 PRKAB2O43741 272 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 PDE8BO95263 885 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 CD44P16070 742 aaKnown RBP18.67■□□□□ 0.58
SDC4-201ENST00000372733 CAPN2P17655 700 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 ARID4AP29374 1257 aaPredicted RBP18.67■□□□□ 0.58
SDC4-201ENST00000372733 CHMP4BP1P59074 171 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 AKNAD1Q5T1N1 836 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 IGSF22Q8N9C0 903 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 PANX2Q96RD6 677 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 SYNRGQ9UMZ2 1314 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 PATL2C9JE40 543 aaKnown RBP18.67■□□□□ 0.58
SDC4-201ENST00000372733 AFMP43652 599 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 SMYD4Q8IYR2 804 aaPredicted RBP18.67■□□□□ 0.58
SDC4-201ENST00000372733 TXLNBQ8N3L3 684 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 CABP5Q9NP86 173 aa18.67■□□□□ 0.58
SDC4-201ENST00000372733 WDR17Q8IZU2 1322 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 TFRCP02786 760 aaKnown RBP18.66■□□□□ 0.58
SDC4-201ENST00000372733 NLRP10Q86W26 655 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 ZNF579Q8NAF0 562 aaKnown RBP18.66■□□□□ 0.58
SDC4-201ENST00000372733 SPATA20Q8TB22 786 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 NUP133Q8WUM0 1156 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 NID2Q14112 1375 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 SNAP23O00161 211 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 TULP2O00295 520 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 ERCC5P28715 1186 aaPredicted RBP18.66■□□□□ 0.58
SDC4-201ENST00000372733 WTAPQ15007 396 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 MFSD6Q6ZSS7 791 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 SRGAP1Q7Z6B7 1085 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 PPFIBP1Q86W92 1011 aa18.66■□□□□ 0.58
SDC4-201ENST00000372733 CDHR2Q9BYE9 1310 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 CCDC151A5D8V7 595 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 GSG1L2A8MUP6 293 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 DEXIO95424 95 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 GTF2E1P29083 439 aaPredicted RBP18.65■□□□□ 0.58
SDC4-201ENST00000372733 NKX1-1Q15270 411 aaPredicted RBP18.65■□□□□ 0.58
SDC4-201ENST00000372733 CRACR2BQ8N4Y2 399 aaPredicted RBP18.65■□□□□ 0.58
SDC4-201ENST00000372733 EPSTI1Q96J88 318 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 CNNM2Q9H8M5 875 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 CHD4Q14839 1912 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 SPATA31A3Q5VYP0 1347 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 RAD51AP2Q09MP3 1159 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 KANK3Q6NY19 840 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 BBXQ8WY36 941 aaPredicted RBP18.65■□□□□ 0.58
SDC4-201ENST00000372733 SHISA4Q96DD7 197 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 KRT23Q9C075 422 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 ANKZF1Q9H8Y5 726 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 PRDM11Q9NQV5 511 aa18.65■□□□□ 0.58
SDC4-201ENST00000372733 IRS4O14654 1257 aaPredicted RBP18.64■□□□□ 0.57
SDC4-201ENST00000372733 UQCRFS1P1P0C7P4 283 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 TDO2P48775 406 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 GIGYF2Q6Y7W6 1299 aaKnown RBP18.64■□□□□ 0.57
SDC4-201ENST00000372733 STRN4Q9NRL3 753 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 TIAM2Q8IVF5 1701 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 KIF5CO60282 957 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 MFAP3LO75121 409 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 COBLO75128 1261 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 CUL4BQ13620 913 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 RASGRF1Q13972 1273 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 ZNF569Q5MCW4 686 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 SPATA1Q5VX52 437 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 LCORLQ8N3X6 602 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 SPATA5Q8NB90 893 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 ADD3Q9UEY8 706 aaKnown RBP18.64■□□□□ 0.57
SDC4-201ENST00000372733 ASAP1Q9ULH1 1129 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 CEP131Q9UPN4 1083 aa18.64■□□□□ 0.57
SDC4-201ENST00000372733 PBX1P40424 430 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 JAKMIP3Q5VZ66 844 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 PNKPQ96T60 521 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 CASP14P31944 242 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 GPS2Q13227 327 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 BRD3Q15059 726 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 EARS2Q5JPH6 523 aaKnown RBP18.63■□□□□ 0.57
SDC4-201ENST00000372733 ZNF654Q8IZM8 581 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 ACRBPQ8NEB7 543 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 TMOD3Q9NYL9 352 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 CDC23Q9UJX2 597 aa18.63■□□□□ 0.57
SDC4-201ENST00000372733 IL2RBP14784 551 aa18.62■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 31.9 ms