RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best) BASIC

Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 CEP135Q66GS9 1140 aa25.42■■□□□ 1.66
UPF3A-201ENST00000351487 ANKRD7Q92527 254 aa25.42■■□□□ 1.66
UPF3A-201ENST00000351487 SMIM22K7EJ46 135 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 FUT2Q10981 343 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 SYCP1Q15431 976 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 ARMCX5Q6P1M9 558 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 PCDHB6Q9Y5E3 794 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 SRPRBQ9Y5M8 271 aaKnown RBP25.41■■□□□ 1.66
UPF3A-201ENST00000351487 NT5DC1Q5TFE4 455 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 TBC1D9BQ66K14 1250 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 OLFM4Q6UX06 510 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 CCDC88AQ3V6T2 1871 aa25.41■■□□□ 1.66
UPF3A-201ENST00000351487 ATP1A3P13637 1013 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 XBP1P17861 261 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 PTPN14Q15678 1187 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 PKN1Q16512 942 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 OXER1Q8TDS5 423 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 RBM28Q9NW13 759 aaKnown RBP25.4■■□□□ 1.66
UPF3A-201ENST00000351487 NUTM2BA6NNL0 878 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-201ENST00000351487 NUTM2EB1AL46 878 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-201ENST00000351487 SFPQP23246 707 aaKnown RBP eCLIP25.4■■□□□ 1.66
UPF3A-201ENST00000351487 GRIN1Q05586 938 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 IQCA1Q86XH1 822 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 NUTM2AQ8IVF1 878 aaPredicted RBP25.4■■□□□ 1.66
UPF3A-201ENST00000351487 SHISA4Q96DD7 197 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 NYXQ9GZU5 481 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 KIAA1551Q9HCM1 1747 aa25.4■■□□□ 1.66
UPF3A-201ENST00000351487 PRPF3O43395 683 aaKnown RBP25.39■■□□□ 1.66
UPF3A-201ENST00000351487 CBFA2T2O43439 604 aa25.39■■□□□ 1.66
UPF3A-201ENST00000351487 CALM1P0DP23 149 aa25.39■■□□□ 1.66
UPF3A-201ENST00000351487 CALM2P0DP24 149 aa25.39■■□□□ 1.66
UPF3A-201ENST00000351487 CALM3P0DP25 149 aa25.39■■□□□ 1.66
UPF3A-201ENST00000351487 AKAP17AQ02040 695 aaKnown RBP25.39■■□□□ 1.66
UPF3A-201ENST00000351487 IFIT1BQ5T764 474 aaKnown RBP25.39■■□□□ 1.66
UPF3A-201ENST00000351487 CTR9Q6PD62 1173 aa25.39■■□□□ 1.66
UPF3A-201ENST00000351487 CATIPQ7Z7H3 387 aa25.39■■□□□ 1.66
UPF3A-201ENST00000351487 NSUN4Q96CB9 384 aaKnown RBP25.39■■□□□ 1.66
UPF3A-201ENST00000351487 POSTNQ15063 836 aa25.39■■□□□ 1.65
UPF3A-201ENST00000351487 SPECC1Q5M775 1068 aa25.39■■□□□ 1.65
UPF3A-201ENST00000351487 CCDC112Q8NEF3 446 aa25.39■■□□□ 1.65
UPF3A-201ENST00000351487 PHF20Q9BVI0 1012 aa25.39■■□□□ 1.65
UPF3A-201ENST00000351487 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.39■■□□□ 1.65
UPF3A-201ENST00000351487 CYP2D7A0A087X1C5 515 aa25.38■■□□□ 1.65
UPF3A-201ENST00000351487 ZBTB22O15209 634 aa25.38■■□□□ 1.65
UPF3A-201ENST00000351487 DDAH1O94760 285 aa25.38■■□□□ 1.65
UPF3A-201ENST00000351487 BMP6P22004 513 aa25.38■■□□□ 1.65
UPF3A-201ENST00000351487 GTF2E1P29083 439 aaPredicted RBP25.38■■□□□ 1.65
UPF3A-201ENST00000351487 TROAPQ12815 778 aa25.38■■□□□ 1.65
UPF3A-201ENST00000351487 KIF2AO00139 706 aaPredicted RBP25.37■■□□□ 1.65
UPF3A-201ENST00000351487 RPS8P62241 208 aaKnown RBP25.37■■□□□ 1.65
UPF3A-201ENST00000351487 RC3H1Q5TC82 1133 aaKnown RBP25.37■■□□□ 1.65
UPF3A-201ENST00000351487 TMED8Q6PL24 325 aaPredicted RBP25.37■■□□□ 1.65
UPF3A-201ENST00000351487 BICDL1Q6ZP65 573 aa25.37■■□□□ 1.65
UPF3A-201ENST00000351487 NARFQ9UHQ1 456 aa25.37■■□□□ 1.65
UPF3A-201ENST00000351487 FOXN1O15353 648 aa25.37■■□□□ 1.65
UPF3A-201ENST00000351487 ORC4O43929 436 aa25.37■■□□□ 1.65
UPF3A-201ENST00000351487 SARSP49591 514 aaKnown RBP25.37■■□□□ 1.65
UPF3A-201ENST00000351487 CABP5Q9NP86 173 aa25.37■■□□□ 1.65
UPF3A-201ENST00000351487 POLR2DO15514 142 aaKnown RBP25.36■■□□□ 1.65
UPF3A-201ENST00000351487 KLRK1P26718 216 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 UBASH3AP57075 661 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 CCDC94Q9BW85 323 aaPredicted RBP25.36■■□□□ 1.65
UPF3A-201ENST00000351487 ANKRD2Q9GZV1 360 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 MAN1B1Q9UKM7 699 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 PSDA5PKW4 1024 aaPredicted RBP25.36■■□□□ 1.65
UPF3A-201ENST00000351487 NRDCO43847 1150 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 KRT2P35908 639 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 MECOMQ03112 1051 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 E4F1Q66K89 784 aaPredicted RBP25.36■■□□□ 1.65
UPF3A-201ENST00000351487 KANK3Q6NY19 840 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 TRIML1Q8N9V2 468 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 VPS54Q9P1Q0 977 aa25.36■■□□□ 1.65
UPF3A-201ENST00000351487 BTAF1O14981 1849 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 USP17L12C9JPN9 530 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 USP17L21D6R901 530 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 NLRP3Q96P20 1036 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 SERTAD1Q9UHV2 236 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 TRIM75PA6NK02 468 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 ACTN4O43707 911 aaKnown RBP25.35■■□□□ 1.65
UPF3A-201ENST00000351487 PDE4BQ07343 736 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 FAM98CQ17RN3 349 aaKnown RBP25.35■■□□□ 1.65
UPF3A-201ENST00000351487 TMTC3Q6ZXV5 915 aa25.35■■□□□ 1.65
UPF3A-201ENST00000351487 TRMT1Q9NXH9 659 aaKnown RBP25.35■■□□□ 1.65
UPF3A-201ENST00000351487 AATFQ9NY61 560 aaKnown RBP eCLIP25.35■■□□□ 1.65
UPF3A-201ENST00000351487 PRDM1O75626 825 aa25.34■■□□□ 1.65
UPF3A-201ENST00000351487 PLEKHA8P1O95397 391 aa25.34■■□□□ 1.65
UPF3A-201ENST00000351487 SERPINC1P01008 464 aa25.34■■□□□ 1.65
UPF3A-201ENST00000351487 HIBADHP31937 336 aaKnown RBP25.34■■□□□ 1.65
UPF3A-201ENST00000351487 NCBP1Q09161 790 aaKnown RBP25.34■■□□□ 1.65
UPF3A-201ENST00000351487 MLKLQ8NB16 471 aa25.34■■□□□ 1.65
UPF3A-201ENST00000351487 DPF2Q92785 391 aa25.34■■□□□ 1.65
UPF3A-201ENST00000351487 CRNKL1Q9BZJ0 848 aaKnown RBP25.34■■□□□ 1.65
UPF3A-201ENST00000351487 DCP1AQ9NPI6 582 aaPredicted RBP25.34■■□□□ 1.65
UPF3A-201ENST00000351487 RPS6KA4O75676 772 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 KCNQ4P56696 695 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 MORC3Q14149 939 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 SPATA20Q8TB22 786 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 SETDB2Q96T68 719 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 CSRNP2Q9H175 543 aa25.33■■□□□ 1.65
UPF3A-201ENST00000351487 ATP8A2Q9NTI2 1148 aa25.33■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms