RNA–Protein interactions for RNA: ENST00000324771.12

DDR1-223, Transcript of discoidin domain receptor tyrosine kinase 1, human

APPRIS ALT2 TSL 5 BASIC

Gene DDR1, Length 4,148 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-223	ENST00000324771	SMARCC2	Q8TAQ2	1214 aa		13.42	□□□□□ -0.26
DDR1-223	ENST00000324771	XPO4	Q9C0E2	1151 aa	Known RBP	13.42	□□□□□ -0.26
DDR1-223	ENST00000324771	ZMYM6	O95789	1325 aa		13.42	□□□□□ -0.26
DDR1-223	ENST00000324771	USP17L3	A6NCW0	530 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	USP17L4	A6NCW7	530 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	USP8	P40818	1118 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	CACNB3	P54284	484 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	MECOM	Q03112	1051 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	USP17L1	Q7RTZ2	530 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	ARHGEF1	Q92888	912 aa	Known RBP	13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	GJA3	Q9Y6H8	435 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	BAZ2B	Q9UIF8	2168 aa	Known RBP	13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	CASQ1	P31415	396 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	LONRF3	Q496Y0	759 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	C11orf57	Q6ZUT1	292 aa	Predicted RBP	13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	TBC1D7	Q9P0N9	293 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	IGSF3	O75054	1194 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	GOLGA8F	Q08AF8	430 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	GOLGA8DP	Q0D2H9	430 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	RBM28	Q9NW13	759 aa	Known RBP	13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	CUTA	O60888	179 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	YEATS4	O95619	227 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	BMP15	O95972	392 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	GNA11	P29992	359 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	REST	Q13127	1097 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	DPCR1	Q3MIW9	517 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	CTNND2	Q9UQB3	1225 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	MRVI1	Q9Y6F6	885 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	NEDD4	P46934	1319 aa		13.41	□□□□□ -0.26
DDR1-223	ENST00000324771	MEGF6	O75095	1541 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	KLRF2	D3W0D1	207 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	PSMA7	O14818	248 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	CHMP2A	O43633	222 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	SLC1A4	P43007	532 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	AMPD3	Q01432	767 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	SPA17	Q15506	151 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	KRT79	Q5XKE5	535 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	SMYD4	Q8IYR2	804 aa	Predicted RBP	13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	LARGE2	Q8N3Y3	721 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	PGBD1	Q96JS3	809 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	RUFY1	Q96T51	708 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	PCDHA5	Q9Y5H7	936 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771		H0YIN7	160 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	SYCP1	Q15431	976 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	ATL3	Q6DD88	541 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	CPXCR1	Q8N123	301 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	TSG101	Q99816	390 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	CENPH	Q9H3R5	247 aa		13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	ZNF397	Q8NF99	534 aa	Predicted RBP	13.4	□□□□□ -0.26
DDR1-223	ENST00000324771	ZNF609	O15014	1411 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	SH2B2	O14492	632 aa	Predicted RBP	13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	AKR1B10	O60218	316 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	NEMF	O60524	1076 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	KIF23	Q02241	960 aa	Predicted RBP	13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	POSTN	Q15063	836 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	PPP4R3B	Q5MIZ7	849 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	SENP2	Q9HC62	589 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	MYOM1	P52179	1685 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	PLEKHA8P1	O95397	391 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	UBXN1	Q04323	297 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	PTGDR	Q13258	359 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	SPDYE3	A6NKU9	549 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	POLR3G	O15318	223 aa	Predicted RBP	13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	AXDND1	Q5T1B0	1012 aa	Predicted RBP	13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	SPICE1	Q8N0Z3	855 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	CCDC150	Q8NCX0	1101 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	TRPC5	Q9UL62	973 aa	Predicted RBP	13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	SIGLEC1	Q9BZZ2	1709 aa		13.39	□□□□□ -0.27
DDR1-223	ENST00000324771	SMCO2	A6NFE2	343 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	FAM196B	A6NMK8	535 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	CASP1	P29466	404 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	CDC27	P30260	824 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	FANCL	Q9NW38	375 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	MED23	Q9ULK4	1368 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	ERICH4	A6NGS2	130 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	PPIP5K2	O43314	1243 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	ODF2	Q5BJF6	829 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	USP17L2	Q6R6M4	530 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	MAEA	Q7L5Y9	396 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	LINC00301	Q8NCQ3	95 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	PYCARD	Q9ULZ3	195 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	SLC16A2	P36021	539 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	ADK	P55263	362 aa	Known RBP	13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	TAB2	Q9NYJ8	693 aa		13.38	□□□□□ -0.27
DDR1-223	ENST00000324771	RPS6KA4	O75676	772 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	PDE4D	Q08499	809 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	COL9A3	Q14050	684 aa	Predicted RBP	13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	JDP2	Q8WYK2	163 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	HOMER2	Q9NSB8	354 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	PCDHB6	Q9Y5E3	794 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	CLRN2	A0PK11	232 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	TRIM28	Q13263	835 aa	Known RBP	13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	SYCP3	Q8IZU3	236 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	RCOR1	Q9UKL0	485 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	NLRP12	P59046	1061 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	TAF3	Q5VWG9	929 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	MTERF4	Q7Z6M4	381 aa	Known RBP	13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	CCDC102A	Q96A19	550 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	PPP1R9B	Q96SB3	815 aa		13.37	□□□□□ -0.27
DDR1-223	ENST00000324771	ARPP21	Q9UBL0	812 aa	Predicted RBP	13.37	□□□□□ -0.27

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