RNA–Protein interactions for RNA: ENSMUST00000110301.1

Clcn3-204, Transcript of H(+)/Cl(-) exchange transporter 3, mousemouse

APPRIS ALT1 TSL 1 (best) BASIC

Gene Clcn3, Length 4,099 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Clcn3-204ENSMUST00000110301 Cypt15B1AXS0 87 aa8.19□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Gm9821Q8K076 103 aa8.18□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Megf8P60882 2789 aa8.18□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Cypt14J3QPF7 87 aa8.17□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Gm10999F6Q4M4 69 aa8.17□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Odf3bQ5M8M2 238 aa8.17□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Cdc42se1Q8BHL7 80 aa8.16□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Mp68P56379 58 aa8.16□□□□□ -1.1
Clcn3-204ENSMUST00000110301 4933415A04RikQ9D443 101 aa8.15□□□□□ -1.1
Clcn3-204ENSMUST00000110301 Krtap29-1A2A5X4 342 aa8.14□□□□□ -1.11
Clcn3-204ENSMUST00000110301 Gm21887J3QQ04 176 aa8.14□□□□□ -1.11
Clcn3-204ENSMUST00000110301 Gm2696A0A1W2P709 240 aa8.12□□□□□ -1.11
Clcn3-204ENSMUST00000110301 Gm20538F6Z9R1 75 aa8.12□□□□□ -1.11
Clcn3-204ENSMUST00000110301 Prm2P07978 107 aa8.12□□□□□ -1.11
Clcn3-204ENSMUST00000110301 Xirp2Q4U4S6 3784 aa8.08□□□□□ -1.12
Clcn3-204ENSMUST00000110301 Coa5Q99M07 74 aa8.08□□□□□ -1.12
Clcn3-204ENSMUST00000110301 Q8BGJ3 129 aa8.07□□□□□ -1.12
Clcn3-204ENSMUST00000110301 Krtap14O08640 167 aa8.06□□□□□ -1.12
Clcn3-204ENSMUST00000110301 Gm3646F6S692 53 aa8.05□□□□□ -1.12
Clcn3-204ENSMUST00000110301 BsnO88737 3942 aa8.04□□□□□ -1.12
Clcn3-204ENSMUST00000110301 Defb1P56386 69 aa8.03□□□□□ -1.12
Clcn3-204ENSMUST00000110301 Chtf8P0CG14 533 aa8.02□□□□□ -1.13
Clcn3-204ENSMUST00000110301 Ndufb1P0DN34 57 aa7.98□□□□□ -1.13
Clcn3-204ENSMUST00000110301 2310034C09RikQ9D746 214 aa7.96□□□□□ -1.13
Clcn3-204ENSMUST00000110301 Gm16253D3Z167 63 aa7.95□□□□□ -1.14
Clcn3-204ENSMUST00000110301 Phxr4P15974 95 aa7.93□□□□□ -1.14
Clcn3-204ENSMUST00000110301 Gm20661K7N787 53 aa7.9□□□□□ -1.14
Clcn3-204ENSMUST00000110301 4930507D05RikQ8C9C9 103 aa7.9□□□□□ -1.14
Clcn3-204ENSMUST00000110301 Tnp2P11378 117 aa7.88□□□□□ -1.15
Clcn3-204ENSMUST00000110301 Gm37013Q8K491 104 aa7.84□□□□□ -1.15
Clcn3-204ENSMUST00000110301 Pla2g10Q9QXX3 151 aa7.84□□□□□ -1.15
Clcn3-204ENSMUST00000110301 Hspg2Q05793 3707 aaKnown RBP7.8□□□□□ -1.16
Clcn3-204ENSMUST00000110301 Dnah14A0A140LIJ4 4489 aa7.8□□□□□ -1.16
Clcn3-204ENSMUST00000110301 Gm17606F6ZL36 78 aa7.78□□□□□ -1.16
Clcn3-204ENSMUST00000110301 Gm21798J3QNU5 87 aa7.75□□□□□ -1.17
Clcn3-204ENSMUST00000110301 Gm9918Q8BUR5 174 aa7.75□□□□□ -1.17
Clcn3-204ENSMUST00000110301 Rnase13Q5GAM7 153 aa7.73□□□□□ -1.17
Clcn3-204ENSMUST00000110301 Krtap15-1Q9QZU5 150 aa7.73□□□□□ -1.17
Clcn3-204ENSMUST00000110301 Limd2Q8BGB5 128 aa7.7□□□□□ -1.18
Clcn3-204ENSMUST00000110301 Gm4491E0CX42 125 aa7.69□□□□□ -1.18
Clcn3-204ENSMUST00000110301 Dnah10D3YYQ8 4591 aa7.68□□□□□ -1.18
Clcn3-204ENSMUST00000110301 Gm2310J3QNJ2 377 aa7.67□□□□□ -1.18
Clcn3-204ENSMUST00000110301 Sec61bQ9CQS8 96 aaKnown RBP7.59□□□□□ -1.19
Clcn3-204ENSMUST00000110301 Uqcr11Q9CPX8 56 aa7.57□□□□□ -1.2
Clcn3-204ENSMUST00000110301 Gm5767A0A0J9YTU8 78 aa7.57□□□□□ -1.2
Clcn3-204ENSMUST00000110301 Romo1P60603 79 aa7.53□□□□□ -1.2
Clcn3-204ENSMUST00000110301 Huwe1Q7TMY8 4377 aaKnown RBP7.47□□□□□ -1.21
Clcn3-204ENSMUST00000110301 Csmd3Q80T79 3707 aa7.45□□□□□ -1.22
Clcn3-204ENSMUST00000110301 Gm5965D3Z724 196 aa7.44□□□□□ -1.22
Clcn3-204ENSMUST00000110301 Rps29P62274 56 aa7.42□□□□□ -1.22
Clcn3-204ENSMUST00000110301 Ndufaf8A2AMZ4 74 aa7.4□□□□□ -1.23
Clcn3-204ENSMUST00000110301 Gm9736A0A1W2P7N1 277 aa7.34□□□□□ -1.23
Clcn3-204ENSMUST00000110301 Dnah7bL7N1Y0 4068 aa7.33□□□□□ -1.24
Clcn3-204ENSMUST00000110301 CriptO70333 101 aa7.32□□□□□ -1.24
Clcn3-204ENSMUST00000110301 PlecQ9QXS1 4691 aaKnown RBP7.3□□□□□ -1.24
Clcn3-204ENSMUST00000110301 Gm3880A0A1B0GSB3 72 aa7.29□□□□□ -1.24
Clcn3-204ENSMUST00000110301 Dnah17Q69Z23 4481 aa7.27□□□□□ -1.25
Clcn3-204ENSMUST00000110301 Gm9112A2AI92 75 aa7.23□□□□□ -1.25
Clcn3-204ENSMUST00000110301 D6Ertd527eA0A0N4SWI3 464 aa7.22□□□□□ -1.25
Clcn3-204ENSMUST00000110301 TnxbO35452 4006 aa7.22□□□□□ -1.25
Clcn3-204ENSMUST00000110301 Rpl37Q9D823 97 aa7.22□□□□□ -1.25
Clcn3-204ENSMUST00000110301 Fam229aB2KGE5 128 aa7.21□□□□□ -1.26
Clcn3-204ENSMUST00000110301 2310057N15RikQ9D6T8 200 aa7.19□□□□□ -1.26
Clcn3-204ENSMUST00000110301 Spink7Q6IE32 76 aa7.18□□□□□ -1.26
Clcn3-204ENSMUST00000110301 Gm9955Q8CEJ8 102 aa7.18□□□□□ -1.26
Clcn3-204ENSMUST00000110301 Krtap19-5O08632 62 aa7.17□□□□□ -1.26
Clcn3-204ENSMUST00000110301 Dnah5Q8VHE6 4621 aa7.16□□□□□ -1.26
Clcn3-204ENSMUST00000110301 Dnah11E9Q7N9 4488 aa7.16□□□□□ -1.26
Clcn3-204ENSMUST00000110301 Dnah9B1AR51 4484 aa7.13□□□□□ -1.27
Clcn3-204ENSMUST00000110301 Cox6b2Q80ZN9 88 aa7.13□□□□□ -1.27
Clcn3-204ENSMUST00000110301 Dnah6E9Q0B6 4144 aa7.11□□□□□ -1.27
Clcn3-204ENSMUST00000110301 PrkdcP97313 4128 aa7.1□□□□□ -1.27
Clcn3-204ENSMUST00000110301 Vps13dB1ART2 4390 aa7.08□□□□□ -1.28
Clcn3-204ENSMUST00000110301 Gm10382Q3V0T5 144 aa7.06□□□□□ -1.28
Clcn3-204ENSMUST00000110301 Kmt2aP55200 3966 aa7.06□□□□□ -1.28
Clcn3-204ENSMUST00000110301 Ryr1E9PZQ0 5035 aa7.05□□□□□ -1.28
Clcn3-204ENSMUST00000110301 Gm11939A2A592 99 aa7.03□□□□□ -1.28
Clcn3-204ENSMUST00000110301 BC029722A0A0N4SW31 51 aa7.02□□□□□ -1.29
Clcn3-204ENSMUST00000110301 Ryr3A2AGL3 4863 aa6.99□□□□□ -1.29
Clcn3-204ENSMUST00000110301 Stard9Q80TF6 4561 aa6.99□□□□□ -1.29
Clcn3-204ENSMUST00000110301 2310079G19RikQ9D6L6 185 aa6.98□□□□□ -1.29
Clcn3-204ENSMUST00000110301 Dnah3Q8BW94 4083 aa6.97□□□□□ -1.29
Clcn3-204ENSMUST00000110301 A930033H14RikG5E8X6 103 aa6.97□□□□□ -1.29
Clcn3-204ENSMUST00000110301 Gm19426M0QWC7 77 aa6.96□□□□□ -1.29
Clcn3-204ENSMUST00000110301 Dync2h1Q45VK7 4306 aa6.94□□□□□ -1.3
Clcn3-204ENSMUST00000110301 Lrp1bQ9JI18 4599 aa6.86□□□□□ -1.31
Clcn3-204ENSMUST00000110301 Fras1Q80T14 4010 aa6.85□□□□□ -1.31
Clcn3-204ENSMUST00000110301 ApobE9Q414 4505 aa6.84□□□□□ -1.31
Clcn3-204ENSMUST00000110301 Dnah1E9Q8T7 4250 aa6.84□□□□□ -1.31
Clcn3-204ENSMUST00000110301 Krtap3-2Q9D638 99 aa6.82□□□□□ -1.32
Clcn3-204ENSMUST00000110301 Krtap3-3Q9D7P0 99 aa6.82□□□□□ -1.32
Clcn3-204ENSMUST00000110301 Dync1h1Q9JHU4 4644 aaKnown RBP6.82□□□□□ -1.32
Clcn3-204ENSMUST00000110301 Gm10318A0A1W2P728 225 aa6.8□□□□□ -1.32
Clcn3-204ENSMUST00000110301 Gm17416Q30KP4 66 aa6.76□□□□□ -1.33
Clcn3-204ENSMUST00000110301 Crct1Q6PAI5 102 aa6.73□□□□□ -1.33
Clcn3-204ENSMUST00000110301 Gm20537G3UYK7 97 aa6.72□□□□□ -1.33
Clcn3-204ENSMUST00000110301 Mycbp2Q7TPH6 4711 aa6.72□□□□□ -1.33
Clcn3-204ENSMUST00000110301 Camk2n1Q6QWF9 78 aa6.7□□□□□ -1.34
Clcn3-204ENSMUST00000110301 Lrp1Q91ZX7 4545 aaKnown RBP6.69□□□□□ -1.34
Clcn3-204ENSMUST00000110301 Dnah2P0C6F1 4456 aa6.69□□□□□ -1.34
Retrieved 100 of 22,080 RNA–protein pairs in 85 ms