RNA–Protein interactions for RNA: ENSMUST00000005841.15

Ctcf-201, Transcript of Transcriptional repressor CTCF, mousemouse

APPRIS P1 TSL 1 (best) BASIC

Gene Ctcf, Length 3,782 nt, Biotype protein coding, Subcellular localisation Exosome .

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RNA Protein Prediction (catRAPID) Interaction (Experimental data)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
Ctcf-201ENSMUST00000005841 Igkv8-24A0A140T8P5 121 aa11.1□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Pou2af1Q64693 256 aa11.1□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Chd8Q09XV5 2582 aaKnown RBP11.1□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Igkv3-9A0A140T8P4 119 aa11.08□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Cd164Q9R0L9 197 aa11.08□□□□□ -0.63
Ctcf-201ENSMUST00000005841 Muc2Q80Z19 2680 aa11.08□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Igkv3-2A0A075B5P0 119 aa11.08□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Phxr5P08399 672 aa11.07□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Sprr2jO70561 109 aa11.07□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Defa27F2Z403 93 aa11.05□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Cdc42se1Q8BHL7 80 aa11.05□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Smim29Q8R043 75 aa11.05□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Gm11011D3Z3L9 86 aa11.04□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Abca12E9Q876 2595 aa11.04□□□□□ -0.64
Ctcf-201ENSMUST00000005841 NbasE9Q411 2356 aa11.04□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Ufsp1Q9CZP0 217 aa11.03□□□□□ -0.64
Ctcf-201ENSMUST00000005841 A730009L09RikA0A1B0GS82 72 aa11.03□□□□□ -0.64
Ctcf-201ENSMUST00000005841 Rif1Q6PR54 2419 aaKnown RBP11.03□□□□□ -0.64
Ctcf-201ENSMUST00000005841 E130218I03RikA0A0U1RNU5 63 aa11.02□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Igkv8-19A0A0G2JFN8 121 aa11.01□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Dnah7bL7N1Y0 4068 aa11.01□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Gm9767G3X930 207 aa11.01□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Krtap24-1G3X9A2 248 aa11.01□□□□□ -0.65
Ctcf-201ENSMUST00000005841 D730001G18RikA0A087WQU7 115 aa11.01□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Sprr4Q8CGN8 76 aa11.01□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Spint4Q9D263 159 aa11.01□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Ighv8-13A0A075B5Y0 101 aa11□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Ptpn13Q64512 2453 aa11□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Myo9aQ8C170 2542 aa11□□□□□ -0.65
Ctcf-201ENSMUST00000005841 4933415A04RikQ9D443 101 aa10.98□□□□□ -0.65
Ctcf-201ENSMUST00000005841 6430550D23RikE9Q1X6 194 aa10.98□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Igkv3-10A0A0G2JGN0 119 aa10.97□□□□□ -0.65
Ctcf-201ENSMUST00000005841 C130032M10RikQ8C888 123 aa10.97□□□□□ -0.65
Ctcf-201ENSMUST00000005841 AI606181Q8C7B9 129 aa10.97□□□□□ -0.65
Ctcf-201ENSMUST00000005841 Cox6a2P43023 97 aa10.96□□□□□ -0.65
Ctcf-201ENSMUST00000005841 FlnaQ8BTM8 2647 aaKnown RBP10.96□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Snhg11Q4G0K9 87 aa10.96□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Defa20Q45VN2 95 aa10.95□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Coa6Q8BGD8 79 aa10.95□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Hectd1Q69ZR2 2618 aaKnown RBP10.94□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Gm17577J3QNF7 156 aa10.94□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Spink8Q09TK9 105 aa10.94□□□□□ -0.66
Ctcf-201ENSMUST00000005841 CrygfQ9CXV3 174 aa10.92□□□□□ -0.66
Ctcf-201ENSMUST00000005841 BC048502Q80Y74 154 aa10.92□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Trav14-1A0A0G2JF94 121 aa10.91□□□□□ -0.66
Ctcf-201ENSMUST00000005841 A0A286YCN5 57 aa10.91□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Prr15lQ8JZM2 100 aa10.9□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Dnah17Q69Z23 4481 aa10.9□□□□□ -0.66
Ctcf-201ENSMUST00000005841 AcacbE9Q4Z2 2448 aa10.9□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Mrpl34Q99N91 92 aa10.9□□□□□ -0.66
Ctcf-201ENSMUST00000005841 Cox7b2Q9D2H1 82 aa10.89□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Wnk1P83741 2377 aa10.89□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Gm28374F6SG70 93 aa10.88□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Tex15F8VPN2 2785 aa10.88□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Bahcc1Q3UHR0 2643 aa10.88□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Gm10197F6QEY5 67 aa10.88□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Igkv3-4A0A140T8Q4 119 aa10.87□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Coa5Q99M07 74 aa10.87□□□□□ -0.67
Ctcf-201ENSMUST00000005841 P84750 121 aa10.87□□□□□ -0.67
Ctcf-201ENSMUST00000005841 ApcQ61315 2845 aa10.86□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Usp24B1AY13 2617 aaKnown RBP10.86□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Sprr1aQ62266 144 aa10.86□□□□□ -0.67
Ctcf-201ENSMUST00000005841 TgO08710 2766 aa10.86□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Tenm4Q3UHK6 2771 aa10.85□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Defb2P82020 71 aa10.85□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Leap2Q91V13 76 aa10.85□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Dnah11E9Q7N9 4488 aa10.85□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Dad1P61804 113 aa10.85□□□□□ -0.67
Ctcf-201ENSMUST00000005841 Usp9yF8VPU6 2556 aa10.83□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Tenm1Q9WTS4 2731 aa10.83□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Dmac1Q9CQ00 111 aa10.82□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Hivep3A2A884 2348 aa10.82□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Unc79Q0KK59 2596 aa10.82□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Gm44790A0A0N4SV91 103 aa10.81□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Dync2h1Q45VK7 4306 aa10.81□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Fbn1Q61554 2873 aaKnown RBP10.8□□□□□ -0.68
Ctcf-201ENSMUST00000005841 PscaP57096 123 aa10.8□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Nbeal2Q6ZQA0 2742 aa10.8□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Ankrd11E9Q4F7 2643 aa10.79□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Dnah6E9Q0B6 4144 aa10.79□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Sfta2E9PXB6 77 aa10.79□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Cmc4Q61908 68 aa10.79□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Igkv3-1A0A075B5P1 119 aa10.78□□□□□ -0.68
Ctcf-201ENSMUST00000005841 Tenm2Q9WTS5 2764 aa10.77□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Igkv1-122A0A140T8M9 119 aa10.76□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Camk2n2Q78WH7 79 aa10.75□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Defa28D3Z1V9 94 aa10.75□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Cdk2ap2Q9CPY4 127 aa10.74□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Fam104aA2A6P4 185 aa10.73□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Odf3bQ5M8M2 238 aa10.72□□□□□ -0.69
Ctcf-201ENSMUST00000005841 A0A286YE02 88 aa10.72□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Vpreb3D3Z6J4 130 aa10.71□□□□□ -0.69
Ctcf-201ENSMUST00000005841 Gm11627A6PWP4 55 aa10.7□□□□□ -0.7
Ctcf-201ENSMUST00000005841 Gm2310J3QNJ2 377 aa10.7□□□□□ -0.7
Ctcf-201ENSMUST00000005841 Fam168bQ80XQ8 194 aa10.7□□□□□ -0.7
Ctcf-201ENSMUST00000005841 Zcchc13Q9D548 170 aa10.7□□□□□ -0.7
Ctcf-201ENSMUST00000005841 Prol1E9PYQ4 312 aa10.69□□□□□ -0.7
Ctcf-201ENSMUST00000005841 Dnah9B1AR51 4484 aa10.69□□□□□ -0.7
Ctcf-201ENSMUST00000005841 Setd2E9Q5F9 2537 aa10.69□□□□□ -0.7
Ctcf-201ENSMUST00000005841 AplnQ9R0R4 77 aa10.69□□□□□ -0.7
Retrieved 100 of 22,080 RNA–protein pairs in 67.7 ms