RNA–Protein interactions for RNA: YPR056W

TFB4, Transcript of Subunit of TFIIH complex, yeast

Gene TFB4, Length 1,017 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
TFB4	YPR056W	YNR068C	P53754	272 aa		6.37	□□□□□ -1.39
TFB4	YPR056W	JJJ1	P53863	590 aa		6.37	□□□□□ -1.39
TFB4	YPR056W	YDR514C	Q04408	483 aa		6.37	□□□□□ -1.39
TFB4	YPR056W	BMS1	Q08965	1183 aa	Known RBP	6.37	□□□□□ -1.39
TFB4	YPR056W	CWC2	Q12046	339 aa	Predicted RBP	6.37	□□□□□ -1.39
TFB4	YPR056W	RUD3	Q12234	484 aa	Known RBP	6.37	□□□□□ -1.39
TFB4	YPR056W	PHO5	P00635	467 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	POL3	P15436	1097 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	SEC65	P29478	273 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	NTG1	P31378	399 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	MTG2	P38860	518 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	STL1	P39932	569 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	EAF5	P39995	279 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	MKT1	P40850	830 aa	Known RBP	6.36	□□□□□ -1.39
TFB4	YPR056W	NOP9	P47077	666 aa	Known RBP	6.36	□□□□□ -1.39
TFB4	YPR056W	PUS4	P48567	403 aa	Known RBP	6.36	□□□□□ -1.39
TFB4	YPR056W	SUN4	P53616	420 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	BSC5	P53755	489 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	PSF3	Q12146	194 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	PCD1	Q12524	340 aa		6.36	□□□□□ -1.39
TFB4	YPR056W	GRR1	P24814	1151 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	CLB4	P24871	460 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	GYP6	P32806	458 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	GCS1	P35197	352 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	SWH1	P35845	1188 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	RPC37	P36121	282 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	SCS2	P40075	244 aa	Known RBP	6.35	□□□□□ -1.39
TFB4	YPR056W	ATF1	P40353	525 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	SPO22	P40511	975 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	TOF1	P53840	1238 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	VPS75	P53853	264 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	MCP2	Q06567	569 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	ENV7	Q12003	364 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	MDY2	Q12285	212 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	NPC2	Q12408	173 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	ZRT2	Q12436	422 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	SKS1	Q12505	502 aa		6.35	□□□□□ -1.39
TFB4	YPR056W	CTT1	P06115	562 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	ADH4	P10127	382 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	RPB4	P20433	221 aa	Predicted RBP	6.34	□□□□□ -1.39
TFB4	YPR056W	SMY1	P32364	656 aa	Known RBP	6.34	□□□□□ -1.39
TFB4	YPR056W	TGL1	P34163	548 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	SKI2	P35207	1287 aa	Known RBP RIP-Chip data	6.34	□□□□□ -1.39	not detected
TFB4	YPR056W	TEF4	P36008	412 aa	Known RBP	6.34	□□□□□ -1.39
TFB4	YPR056W	APE3	P37302	537 aa	Known RBP	6.34	□□□□□ -1.39
TFB4	YPR056W	SIF2	P38262	535 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	SWD1	P39706	426 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	OSW5	P40219	148 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	EPL1	P43572	832 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	YJR039W	P47107	1121 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	NIT3	P49954	291 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	RAI1	P53063	387 aa	Known RBP	6.34	□□□□□ -1.39
TFB4	YPR056W	DUO1	P53168	247 aa	Known RBP	6.34	□□□□□ -1.39
TFB4	YPR056W	ERB1	Q04660	807 aa	Known RBP	6.34	□□□□□ -1.39
TFB4	YPR056W	YPR196W	Q06595	470 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	TGL5	Q12043	749 aa		6.34	□□□□□ -1.39
TFB4	YPR056W	TPK1	P06244	397 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	APE1	P14904	514 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	STE13	P33894	931 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	STB6	P36085	766 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	CHS7	P38843	316 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	SMC2	P38989	1170 aa	Known RBP	6.33	□□□□□ -1.4
TFB4	YPR056W	YER034W	P40022	185 aa	Known RBP	6.33	□□□□□ -1.4
TFB4	YPR056W	THI6	P41835	540 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	ALY2	P47029	1046 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	CCM1	P48237	864 aa	Predicted RBP	6.33	□□□□□ -1.4
TFB4	YPR056W	SPH1	Q06160	661 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	SKM1	Q12469	655 aa		6.33	□□□□□ -1.4
TFB4	YPR056W	SEC53	P07283	254 aa	Known RBP	6.32	□□□□□ -1.4
TFB4	YPR056W	BET2	P20133	325 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	PRP22	P24384	1145 aa	Known RBP	6.32	□□□□□ -1.4
TFB4	YPR056W	SUR1	P33300	382 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	COY1	P34237	679 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	SET3	P36124	751 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	PCH2	P38126	564 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	YBR138C	P38277	524 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	MSS4	P38994	779 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	NAS2	P40555	220 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	SLI1	P53304	468 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	SNF12	P53628	566 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	HUA2	Q12134	243 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	UPC2	Q12151	913 aa		6.32	□□□□□ -1.4
TFB4	YPR056W	NOT3	P06102	836 aa	Known RBP	6.31	□□□□□ -1.4
TFB4	YPR056W	CLB1	P24868	471 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	CYS3	P31373	394 aa	Known RBP	6.31	□□□□□ -1.4
TFB4	YPR056W	MRPL36	P36531	177 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	PEX18	P38855	283 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	STT3	P39007	718 aa	Known RBP	6.31	□□□□□ -1.4
TFB4	YPR056W	PRM2	P40534	656 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	YFL052W	P43551	465 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	BUD27	P43573	796 aa	Known RBP RIP-Chip data	6.31	□□□□□ -1.4	not detected
TFB4	YPR056W	YGR266W	P53326	701 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	DAK1	P54838	584 aa	Known RBP	6.31	□□□□□ -1.4
TFB4	YPR056W	MTD1	Q02046	320 aa	Known RBP	6.31	□□□□□ -1.4
TFB4	YPR056W	RBA50	Q04418	439 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	VBA4	Q04602	768 aa	Known RBP	6.31	□□□□□ -1.4
TFB4	YPR056W	AIM39	Q08223	395 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	GET3	Q12154	354 aa	Known RBP	6.31	□□□□□ -1.4
TFB4	YPR056W	PSY3	Q12318	242 aa		6.31	□□□□□ -1.4
TFB4	YPR056W	VAS1	P07806	1104 aa	Known RBP	6.3	□□□□□ -1.4

Retrieved 100 of 5,963 RNA–protein pairs in 69.2 ms