RNA–Protein interactions for RNA: YPL177C

CUP9, Transcript of Homeodomain-containing transcriptional repressor, yeast

Gene CUP9, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
CUP9	YPL177C	SDH8	P38345	138 aa		4.13	□□□□□ -1.75
CUP9	YPL177C	SPC72	P39723	622 aa		4.13	□□□□□ -1.75
CUP9	YPL177C	ARB1	P40024	610 aa	Known RBP	4.13	□□□□□ -1.75
CUP9	YPL177C	YFL015C	P43578	164 aa		4.13	□□□□□ -1.75
CUP9	YPL177C	YNL092W	P53934	400 aa		4.13	□□□□□ -1.75
CUP9	YPL177C	PCL8	Q08966	492 aa		4.13	□□□□□ -1.75
CUP9	YPL177C	FRE7	Q12333	620 aa		4.13	□□□□□ -1.75
CUP9	YPL177C	SEC3	P33332	1336 aa	Known RBP	4.13	□□□□□ -1.75
CUP9	YPL177C	AAC1	P04710	309 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	RPL7A	P05737	244 aa	Known RBP	4.12	□□□□□ -1.75
CUP9	YPL177C	POL3	P15436	1097 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	PMA2	P19657	947 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	MRPL9	P31334	269 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	FRD1	P32614	470 aa	Known RBP	4.12	□□□□□ -1.75
CUP9	YPL177C	VPS27	P40343	622 aa	Known RBP	4.12	□□□□□ -1.75
CUP9	YPL177C	UBX4	P54730	416 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	YML119W	Q03208	357 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	VPS64	Q03944	604 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	CRF1	Q04930	467 aa		4.12	□□□□□ -1.75
CUP9	YPL177C	RPL7B	Q12213	244 aa	Known RBP	4.12	□□□□□ -1.75
CUP9	YPL177C	ADE3	P07245	946 aa	Known RBP	4.11	□□□□□ -1.75
CUP9	YPL177C	SIR1	P21691	654 aa		4.11	□□□□□ -1.75
CUP9	YPL177C	RIT1	P23796	513 aa		4.11	□□□□□ -1.75
CUP9	YPL177C	MCM3	P24279	971 aa	Known RBP	4.11	□□□□□ -1.75
CUP9	YPL177C	YCR061W	P25639	631 aa		4.11	□□□□□ -1.75
CUP9	YPL177C	ARO9	P38840	513 aa	Predicted RBP	4.11	□□□□□ -1.75
CUP9	YPL177C	RPT2	P40327	437 aa	Known RBP	4.11	□□□□□ -1.75
CUP9	YPL177C	WAR1	Q03631	944 aa		4.11	□□□□□ -1.75
CUP9	YPL177C	AQY1	P0CD91	305 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	PHO81	P17442	1178 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	AMD2	P22580	549 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	GDA1	P32621	518 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	MTG2	P38860	518 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	ACA1	P39970	489 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	IRC8	P47046	822 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	ESF2	P53743	316 aa	Known RBP	4.1	□□□□□ -1.75
CUP9	YPL177C	GFD1	Q04839	188 aa	Known RBP	4.1	□□□□□ -1.75
CUP9	YPL177C	IWR1	Q07532	353 aa	Predicted RBP	4.1	□□□□□ -1.75
CUP9	YPL177C	AIM6	Q07716	390 aa		4.1	□□□□□ -1.75
CUP9	YPL177C	LNP1	P38878	278 aa		4.09	□□□□□ -1.75
CUP9	YPL177C	CAB2	P40506	365 aa		4.09	□□□□□ -1.75
CUP9	YPL177C	CPR6	P53691	371 aa	Known RBP	4.09	□□□□□ -1.75
CUP9	YPL177C	UBP16	Q02863	499 aa		4.09	□□□□□ -1.75
CUP9	YPL177C	EIS1	Q05050	843 aa	Known RBP	4.09	□□□□□ -1.75
CUP9	YPL177C	ORM2	Q06144	216 aa		4.09	□□□□□ -1.75
CUP9	YPL177C	HEM1	P09950	548 aa	Predicted RBP	4.08	□□□□□ -1.76
CUP9	YPL177C	BEM3	P32873	1128 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	YBR138C	P38277	524 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	VPS8	P39702	1274 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	EXO1	P39875	702 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	PUG1	P40100	303 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	ERR3	P42222	437 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	YJL043W	P47053	257 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	RAD33	Q04231	177 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	CRT10	Q08226	957 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	AHA1	Q12449	350 aa	Known RBP	4.08	□□□□□ -1.76
CUP9	YPL177C	YER175W-A	Q8TGU4	54 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	Q0010	Q9ZZX9	128 aa		4.08	□□□□□ -1.76
CUP9	YPL177C	DBF20	P32328	564 aa		4.07	□□□□□ -1.76
CUP9	YPL177C	ARP2	P32381	391 aa	Known RBP	4.07	□□□□□ -1.76
CUP9	YPL177C	PAP2	P53632	584 aa	Known RBP	4.07	□□□□□ -1.76
CUP9	YPL177C	ATP23	P53722	227 aa		4.07	□□□□□ -1.76
CUP9	YPL177C	ARA2	Q04212	335 aa		4.07	□□□□□ -1.76
CUP9	YPL177C	YML053C	Q04978	212 aa		4.07	□□□□□ -1.76
CUP9	YPL177C	CIA1	Q05583	330 aa		4.07	□□□□□ -1.76
CUP9	YPL177C	IRC3	Q06683	689 aa		4.07	□□□□□ -1.76
CUP9	YPL177C	MIS1	P09440	975 aa	Known RBP	4.06	□□□□□ -1.76
CUP9	YPL177C	NCP1	P16603	691 aa	Known RBP	4.06	□□□□□ -1.76
CUP9	YPL177C	MSM1	P22438	575 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	CLB4	P24871	460 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	RRP43	P25359	394 aa	Predicted RBP	4.06	□□□□□ -1.76
CUP9	YPL177C	YJU2	P28320	278 aa	Predicted RBP	4.06	□□□□□ -1.76
CUP9	YPL177C	TDA10	P42938	290 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	TAM41	P53230	385 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	ATG21	Q02887	496 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	ATG16	Q03818	150 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	YDL242W	Q07746	117 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	SUL2	Q12325	893 aa		4.06	□□□□□ -1.76
CUP9	YPL177C	YMR084W	A2P2R3	262 aa		4.05	□□□□□ -1.76
CUP9	YPL177C	CHO2	P05374	869 aa	Known RBP	4.05	□□□□□ -1.76
CUP9	YPL177C	RPC34	P32910	317 aa		4.05	□□□□□ -1.76
CUP9	YPL177C	SAP1	P39955	897 aa	Known RBP	4.05	□□□□□ -1.76
CUP9	YPL177C	IES5	P40060	125 aa		4.05	□□□□□ -1.76
CUP9	YPL177C	MAM1	P40065	302 aa		4.05	□□□□□ -1.76
CUP9	YPL177C	COG2	P53271	262 aa		4.05	□□□□□ -1.76
CUP9	YPL177C	ARC35	P53731	342 aa	Known RBP	4.05	□□□□□ -1.76
CUP9	YPL177C	HRD3	Q05787	833 aa		4.05	□□□□□ -1.76
CUP9	YPL177C	LCB4	Q12246	624 aa		4.05	□□□□□ -1.76
CUP9	YPL177C	FUI1	P38196	639 aa		4.04	□□□□□ -1.76
CUP9	YPL177C	LAS21	P40367	830 aa		4.04	□□□□□ -1.76
CUP9	YPL177C	OPT1	P40897	799 aa		4.04	□□□□□ -1.76
CUP9	YPL177C	NMD5	P46970	1048 aa		4.04	□□□□□ -1.76
CUP9	YPL177C	IMA1	P53051	589 aa		4.04	□□□□□ -1.76
CUP9	YPL177C	YPL108W	Q02872	168 aa	Predicted RBP	4.04	□□□□□ -1.76
CUP9	YPL177C	CYK3	Q07533	885 aa		4.04	□□□□□ -1.76
CUP9	YPL177C	PNO1	Q99216	274 aa	Known RBP	4.04	□□□□□ -1.76
CUP9	YPL177C	RTC1	Q08281	1341 aa		4.03	□□□□□ -1.76
CUP9	YPL177C	PET122	P10355	254 aa		4.03	□□□□□ -1.76
CUP9	YPL177C	VPS24	P36095	224 aa	Known RBP	4.03	□□□□□ -1.76
CUP9	YPL177C	SAE2	P46946	345 aa		4.03	□□□□□ -1.76

Retrieved 100 of 5,963 RNA–protein pairs in 44.8 ms