RNA–Protein interactions for RNA: YDR027C

VPS54, Transcript of Component of the GARP (Golgi-associated retrograde protein) complex, yeastyeast

Gene VPS54, Length 2,670 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
VPS54YDR027C PRP19P32523 503 aaKnown RBP1.95□□□□□ -2.1
VPS54YDR027C ATO2P32907 282 aa1.95□□□□□ -2.1
VPS54YDR027C OAF1P39720 1047 aaPredicted RBP1.95□□□□□ -2.1
VPS54YDR027C YHM2Q04013 314 aa1.95□□□□□ -2.1
VPS54YDR027C IQG1Q12280 1495 aa1.95□□□□□ -2.1
VPS54YDR027C HMG2P12684 1045 aa1.94□□□□□ -2.1
VPS54YDR027C NOP1P15646 327 aaKnown RBP1.94□□□□□ -2.1
VPS54YDR027C BUD3P25558 1636 aa1.94□□□□□ -2.1
VPS54YDR027C COQ3P27680 312 aa1.94□□□□□ -2.1
VPS54YDR027C YIR016WP40572 265 aa1.94□□□□□ -2.1
VPS54YDR027C BCK1Q01389 1478 aa1.94□□□□□ -2.1
VPS54YDR027C CRT10Q08226 957 aa1.94□□□□□ -2.1
VPS54YDR027C SRL1Q08673 210 aa1.94□□□□□ -2.1
VPS54YDR027C ACO1P19414 778 aaKnown RBP RIP-Chip data1.94□□□□□ -2.1not detected
VPS54YDR027C BET2P20133 325 aa1.94□□□□□ -2.1
VPS54YDR027C VPS33P20795 691 aa1.94□□□□□ -2.1
VPS54YDR027C YJU2P28320 278 aaPredicted RBP1.94□□□□□ -2.1
VPS54YDR027C VID28P40547 921 aa1.94□□□□□ -2.1
VPS54YDR027C MDV1P47025 714 aa1.94□□□□□ -2.1
VPS54YDR027C YNL058CP53947 316 aa1.94□□□□□ -2.1
VPS54YDR027C CYK3Q07533 885 aa1.94□□□□□ -2.1
VPS54YDR027C MTC7P32633 139 aa1.94□□□□□ -2.1
VPS54YDR027C OAF3P36023 863 aa1.94□□□□□ -2.1
VPS54YDR027C MTG2P38860 518 aa1.94□□□□□ -2.1
VPS54YDR027C YDL183CP48569 320 aa1.94□□□□□ -2.1
VPS54YDR027C SQS1P53866 767 aaKnown RBP1.94□□□□□ -2.1
VPS54YDR027C PTA1Q01329 785 aaPredicted RBP1.94□□□□□ -2.1
VPS54YDR027C MRN1Q08925 612 aaKnown RBP RIP-Chip data1.94□□□□□ -2.1not detected
VPS54YDR027C TOR1P35169 2470 aa1.93□□□□□ -2.1
VPS54YDR027C MLP2P40457 1679 aa1.93□□□□□ -2.1
VPS54YDR027C STU1P38198 1513 aa1.93□□□□□ -2.1
VPS54YDR027C YSP2Q06681 1438 aa1.93□□□□□ -2.1
VPS54YDR027C YEL076C-AP0CX16 216 aa1.93□□□□□ -2.1
VPS54YDR027C YLR464WP0CX17 216 aa1.93□□□□□ -2.1
VPS54YDR027C SEC12P11655 471 aa1.93□□□□□ -2.1
VPS54YDR027C DGR2P32330 852 aa1.93□□□□□ -2.1
VPS54YDR027C YEL076CP39971 216 aa1.93□□□□□ -2.1
VPS54YDR027C LYS20P48570 428 aaKnown RBP1.93□□□□□ -2.1
VPS54YDR027C BOP3P53958 396 aa1.93□□□□□ -2.1
VPS54YDR027C PUF2Q12221 1075 aaKnown RBP RIP-Chip data1.93□□□□□ -2.1not detected
VPS54YDR027C YGR161W-CQ3E744 92 aa1.93□□□□□ -2.1
VPS54YDR027C PNO1Q99216 274 aaKnown RBP1.93□□□□□ -2.1
VPS54YDR027C YCP4P25349 247 aaKnown RBP1.93□□□□□ -2.1
VPS54YDR027C DSS4P32601 143 aa1.93□□□□□ -2.1
VPS54YDR027C RPT3P33298 428 aaKnown RBP1.93□□□□□ -2.1
VPS54YDR027C HXT6P39003 570 aaKnown RBP1.93□□□□□ -2.1
VPS54YDR027C HXT7P39004 570 aa1.93□□□□□ -2.1
VPS54YDR027C ECM9Q02202 377 aa1.93□□□□□ -2.1
VPS54YDR027C HFI1Q12060 488 aa1.93□□□□□ -2.1
VPS54YDR027C NOP14Q99207 810 aaKnown RBP1.93□□□□□ -2.1
VPS54YDR027C TOM1Q03280 3268 aa1.92□□□□□ -2.1
VPS54YDR027C AIM17P23180 465 aaKnown RBP1.92□□□□□ -2.1
VPS54YDR027C MF(ALPHA)2P32435 120 aa1.92□□□□□ -2.1
VPS54YDR027C RPL15BP54780 204 aaPredicted RBP1.92□□□□□ -2.1
VPS54YDR027C MTD1Q02046 320 aaKnown RBP1.92□□□□□ -2.1
VPS54YDR027C SNU56Q03782 492 aaKnown RBP1.92□□□□□ -2.1
VPS54YDR027C NDD1Q08887 554 aa1.92□□□□□ -2.1
VPS54YDR027C UBX3Q12229 455 aa1.92□□□□□ -2.1
VPS54YDR027C YBT1P32386 1661 aa1.92□□□□□ -2.1
VPS54YDR027C TSC11P40061 1430 aa1.92□□□□□ -2.1
VPS54YDR027C ADR1P07248 1323 aa1.92□□□□□ -2.1
VPS54YDR027C PDR12Q02785 1511 aa1.92□□□□□ -2.1
VPS54YDR027C CET1O13297 549 aaPredicted RBP1.92□□□□□ -2.1
VPS54YDR027C ILS1P09436 1072 aaKnown RBP1.92□□□□□ -2.1
VPS54YDR027C PCK1P10963 549 aa1.92□□□□□ -2.1
VPS54YDR027C CDC26P14724 124 aa1.92□□□□□ -2.1
VPS54YDR027C RPL8AP17076 256 aaKnown RBP1.92□□□□□ -2.1
VPS54YDR027C GRX4P32642 244 aa1.92□□□□□ -2.1
VPS54YDR027C SCO2P38072 301 aa1.92□□□□□ -2.1
VPS54YDR027C FAT1P38225 669 aa1.92□□□□□ -2.1
VPS54YDR027C FTH1P38310 465 aa1.92□□□□□ -2.1
VPS54YDR027C GZF3P42944 551 aaKnown RBP1.92□□□□□ -2.1
VPS54YDR027C DNM1P54861 757 aa1.92□□□□□ -2.1
VPS54YDR027C APM4Q99186 491 aa1.92□□□□□ -2.1
VPS54YDR027C VTH1P40438 1549 aa1.91□□□□□ -2.1
VPS54YDR027C VTH2P40890 1549 aa1.91□□□□□ -2.1
VPS54YDR027C TYS1P36421 394 aaKnown RBP1.91□□□□□ -2.1
VPS54YDR027C UBP12P39538 1254 aa1.91□□□□□ -2.1
VPS54YDR027C CIR1P42940 261 aa1.91□□□□□ -2.1
VPS54YDR027C HLJ1P48353 224 aa1.91□□□□□ -2.1
VPS54YDR027C AAT1Q01802 451 aa1.91□□□□□ -2.1
VPS54YDR027C GRS2Q06817 618 aa1.91□□□□□ -2.1
VPS54YDR027C ATX2Q12067 313 aa1.91□□□□□ -2.1
VPS54YDR027C AEP2P22136 580 aa1.91□□□□□ -2.1
VPS54YDR027C CDC5P32562 705 aa1.91□□□□□ -2.1
VPS54YDR027C GDA1P32621 518 aa1.91□□□□□ -2.1
VPS54YDR027C RMA1P36001 430 aaKnown RBP1.91□□□□□ -2.1
VPS54YDR027C YEN1P40028 759 aa1.91□□□□□ -2.1
VPS54YDR027C RAD33Q04231 177 aa1.91□□□□□ -2.1
VPS54YDR027C DSE3Q08729 430 aa1.91□□□□□ -2.1
VPS54YDR027C YOR389WQ08912 624 aa1.91□□□□□ -2.1
VPS54YDR027C YRF1-2P40105 1681 aa1.9□□□□□ -2.1
VPS54YDR027C DID4P36108 232 aa1.9□□□□□ -2.1
VPS54YDR027C IMD2P38697 523 aaKnown RBP1.9□□□□□ -2.1
VPS54YDR027C GND1P38720 489 aaKnown RBP1.9□□□□□ -2.1
VPS54YDR027C RRP8P38961 392 aaKnown RBP1.9□□□□□ -2.1
VPS54YDR027C LAS21P40367 830 aa1.9□□□□□ -2.1
VPS54YDR027C IMD3P50095 523 aaKnown RBP1.9□□□□□ -2.1
VPS54YDR027C COG2P53271 262 aa1.9□□□□□ -2.1
VPS54YDR027C YTM1Q12024 460 aaPredicted RBP1.9□□□□□ -2.1
Retrieved 100 of 5,963 RNA–protein pairs in 11.4 ms