RNA–Protein interactions for RNA: YDL108W

KIN28, Transcript of Serine/threonine protein kinase, subunit of transcription factor TFIIH, yeast

Gene KIN28, Length 921 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
KIN28	YDL108W	ERG6	P25087	383 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	POL4	P25615	582 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	RME1	P32338	300 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	MVD1	P32377	396 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	SMI1	P32566	505 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	MRP4	P32902	394 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	HIS7	P33734	552 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	MTH1	P35198	433 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	MUD2	P36084	527 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	BIT2	P38346	545 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	YJL070C	P40361	888 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	VID28	P40547	921 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	CCT7	P42943	550 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	POL31	P46957	487 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	YJL163C	P46996	555 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	MAD3	P47074	515 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	NOP9	P47077	666 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	TRS130	Q03660	1102 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	INP2	Q03824	705 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	TAF11	Q04226	346 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	VBA4	Q04602	768 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	DPB4	Q04603	196 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	GSF2	Q04697	403 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	YPS7	Q06325	596 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	VPS36	Q06696	566 aa		4.92	□□□□□ -1.62
KIN28	YDL108W	SEC3	P33332	1336 aa	Known RBP	4.92	□□□□□ -1.62
KIN28	YDL108W	TUB2	P02557	457 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	RPS9B	P05755	195 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	PUT4	P15380	627 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	COX11	P19516	300 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	LCB1	P25045	558 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	RPC53	P25441	422 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	EFB1	P32471	206 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	SER1	P33330	395 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	PSY4	P38193	441 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	FMO1	P38866	432 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	VPS45	P38932	577 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	SMC2	P38989	1170 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	LYS9	P38999	446 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	NUP60	P39705	539 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	AIM10	P39965	576 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	GET2	P40056	285 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	EMP65	P40085	556 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	AXL1	P40851	1208 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	BAP3	P41815	604 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	TRF5	P48561	642 aa	Known RBP	4.91	□□□□□ -1.62
KIN28	YDL108W	SLD3	P53135	668 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	LSB1	P53281	241 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	KIN4	Q01919	800 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	ADY4	Q05955	493 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	YCG1	Q06680	1035 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	IRC13	Q08630	104 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	GLE1	Q12315	538 aa		4.91	□□□□□ -1.62
KIN28	YDL108W	PPR1	P07272	904 aa	Predicted RBP	4.9	□□□□□ -1.63
KIN28	YDL108W	MIS1	P09440	975 aa	Known RBP	4.9	□□□□□ -1.63
KIN28	YDL108W	KSS1	P14681	368 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	PDX1	P16451	410 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	PRP28	P23394	588 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	KRE6	P32486	720 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	VPS17	P32913	551 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	CBF5	P33322	483 aa	Known RBP RIP-Chip data	4.9	□□□□□ -1.63	not detected
KIN28	YDL108W	YBL028C	P38202	106 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	SLX1	P38324	304 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	PIH1	P38768	344 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	REV7	P38927	245 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	GDI1	P39958	451 aa	Known RBP	4.9	□□□□□ -1.63
KIN28	YDL108W	UBP7	P40453	1071 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	MSE1	P48525	536 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	LSC1	P53598	329 aa	Known RBP	4.9	□□□□□ -1.63
KIN28	YDL108W	RCR2	Q03446	210 aa	Known RBP	4.9	□□□□□ -1.63
KIN28	YDL108W	PPN1	Q04119	674 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	ARP9	Q05123	467 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	BLS1	Q06071	122 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	YOL073C	Q08232	322 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	POM34	Q12445	299 aa		4.9	□□□□□ -1.63
KIN28	YDL108W	PAR32	Q12515	295 aa	Known RBP	4.9	□□□□□ -1.63
KIN28	YDL108W	SEC18	P18759	758 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	PEX1	P24004	1043 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	PRP22	P24384	1145 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	KIN82	P25341	720 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	LOT5	P34234	306 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	RMA1	P36001	430 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	TEF4	P36008	412 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	DED81	P38707	554 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	STL1	P39932	569 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	YEL068C	P39977	110 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	NOP16	P40007	231 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	SEC28	P40509	296 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	CIR1	P42940	261 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	BIT61	P47041	543 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	ENP2	P48234	707 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	UBC11	P52492	156 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	PEX25	Q02969	394 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	YMR155W	Q03795	547 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	YDR131C	Q03899	556 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	ARA2	Q04212	335 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	ARR2	Q06597	130 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	HIM1	Q06674	414 aa		4.89	□□□□□ -1.63
KIN28	YDL108W	TSR1	Q07381	788 aa	Known RBP	4.89	□□□□□ -1.63
KIN28	YDL108W	PEX15	Q08215	383 aa		4.89	□□□□□ -1.63

Retrieved 100 of 5,963 RNA–protein pairs in 16.5 ms