RNA–Protein interactions for RNA: ENST00000637439.1

CIITA-215, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 5

Gene CIITA, Length 850 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-215ENST00000637439 FAM110CQ1W6H9 321 aa22■■□□□ 1.11
CIITA-215ENST00000637439 TBC1D9Q6ZT07 1266 aa22■■□□□ 1.11
CIITA-215ENST00000637439 ZNF280CQ8ND82 737 aa22■■□□□ 1.11
CIITA-215ENST00000637439 UNC93B1Q9H1C4 597 aa22■■□□□ 1.11
CIITA-215ENST00000637439 LRP2BPQ9P2M1 347 aa22■■□□□ 1.11
CIITA-215ENST00000637439 NR2E3Q9Y5X4 410 aa22■■□□□ 1.11
CIITA-215ENST00000637439 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP22■■□□□ 1.11
CIITA-215ENST00000637439 TRIM27P14373 513 aa21.99■■□□□ 1.11
CIITA-215ENST00000637439 PI16Q6UXB8 463 aa21.99■■□□□ 1.11
CIITA-215ENST00000637439 ATF7IPQ6VMQ6 1270 aa21.99■■□□□ 1.11
CIITA-215ENST00000637439 TEX11Q8IYF3 940 aa21.99■■□□□ 1.11
CIITA-215ENST00000637439 ANKRD13CQ8N6S4 541 aa21.99■■□□□ 1.11
CIITA-215ENST00000637439 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.99■■□□□ 1.11
CIITA-215ENST00000637439 HERC5Q9UII4 1024 aaKnown RBP21.99■■□□□ 1.11
CIITA-215ENST00000637439 FARP2O94887 1054 aaPredicted RBP21.98■■□□□ 1.11
CIITA-215ENST00000637439 INHAP05111 366 aa21.98■■□□□ 1.11
CIITA-215ENST00000637439 ELNP15502 786 aa21.98■■□□□ 1.11
CIITA-215ENST00000637439 CAP2P40123 477 aa21.98■■□□□ 1.11
CIITA-215ENST00000637439 GCLCP48506 637 aaPredicted RBP21.98■■□□□ 1.11
CIITA-215ENST00000637439 SPP2Q13103 211 aa21.98■■□□□ 1.11
CIITA-215ENST00000637439 TREML2Q5T2D2 321 aa21.98■■□□□ 1.11
CIITA-215ENST00000637439 CHRDL2Q6WN34 429 aa21.98■■□□□ 1.11
CIITA-215ENST00000637439 CCDC84Q86UT8 332 aaPredicted RBP21.98■■□□□ 1.11
CIITA-215ENST00000637439 LOC285556D6RIA3 1793 aa21.97■■□□□ 1.11
CIITA-215ENST00000637439 PNMA6EA0A0J9YXQ4 647 aa21.97■■□□□ 1.11
CIITA-215ENST00000637439 FAM196BA6NMK8 535 aa21.97■■□□□ 1.11
CIITA-215ENST00000637439 USP17L5A8MUK1 530 aa21.97■■□□□ 1.11
CIITA-215ENST00000637439 BAG3O95817 575 aa21.97■■□□□ 1.11
CIITA-215ENST00000637439 MCAMP43121 646 aa21.97■■□□□ 1.11
CIITA-215ENST00000637439 FRAT1Q92837 279 aaPredicted RBP21.97■■□□□ 1.11
CIITA-215ENST00000637439 DHX36Q9H2U1 1008 aaKnown RBP21.97■■□□□ 1.11
CIITA-215ENST00000637439 AS3MTQ9HBK9 375 aa21.97■■□□□ 1.11
CIITA-215ENST00000637439 ATAD5Q96QE3 1844 aa21.96■■□□□ 1.11
CIITA-215ENST00000637439 PLCG2P16885 1265 aa21.96■■□□□ 1.11
CIITA-215ENST00000637439 GPR108Q9NPR9 543 aa21.96■■□□□ 1.11
CIITA-215ENST00000637439 PI4KBQ9UBF8 816 aa21.96■■□□□ 1.11
CIITA-215ENST00000637439 TRIOBPQ9H2D6 2365 aa21.95■■□□□ 1.1
CIITA-215ENST00000637439 IGSF3O75054 1194 aa21.95■■□□□ 1.1
CIITA-215ENST00000637439 TFRCP02786 760 aaKnown RBP21.95■■□□□ 1.1
CIITA-215ENST00000637439 HMGCS2P54868 508 aa21.95■■□□□ 1.1
CIITA-215ENST00000637439 SH3D19Q5HYK7 790 aa21.95■■□□□ 1.1
CIITA-215ENST00000637439 CCDC158Q5M9N0 1113 aa21.95■■□□□ 1.1
CIITA-215ENST00000637439 NAA16Q6N069 864 aaPredicted RBP21.95■■□□□ 1.1
CIITA-215ENST00000637439 TAOK2Q9UL54 1235 aa21.95■■□□□ 1.1
CIITA-215ENST00000637439 TTC39AQ5SRH9 613 aa21.94■■□□□ 1.1
CIITA-215ENST00000637439 SH3RF3Q8TEJ3 882 aaPredicted RBP21.94■■□□□ 1.1
CIITA-215ENST00000637439 DEFB118Q96PH6 123 aa21.94■■□□□ 1.1
CIITA-215ENST00000637439 PAK6Q9NQU5 681 aaPredicted RBP21.94■■□□□ 1.1
CIITA-215ENST00000637439 BCAR3O75815 825 aa21.93■■□□□ 1.1
CIITA-215ENST00000637439 MAST2Q6P0Q8 1798 aa21.93■■□□□ 1.1
CIITA-215ENST00000637439 CLUAP1Q96AJ1 413 aa21.93■■□□□ 1.1
CIITA-215ENST00000637439 WDR18Q9BV38 432 aa21.93■■□□□ 1.1
CIITA-215ENST00000637439 ASCC2Q9H1I8 757 aaPredicted RBP21.93■■□□□ 1.1
CIITA-215ENST00000637439 RBM27Q9P2N5 1060 aaKnown RBP21.93■■□□□ 1.1
CIITA-215ENST00000637439 ASNSP08243 561 aa21.92■■□□□ 1.1
CIITA-215ENST00000637439 PPP4CP60510 307 aa21.92■■□□□ 1.1
CIITA-215ENST00000637439 OS9Q13438 667 aaPredicted RBP21.92■■□□□ 1.1
CIITA-215ENST00000637439 TNNI3KQ59H18 835 aa21.92■■□□□ 1.1
CIITA-215ENST00000637439 AATFQ9NY61 560 aaKnown RBP eCLIP21.92■■□□□ 1.1
CIITA-215ENST00000637439 FPGT-TNNI3KV9GXZ4 949 aa21.92■■□□□ 1.1
CIITA-215ENST00000637439 DOCK3Q8IZD9 2030 aa21.92■■□□□ 1.1
CIITA-215ENST00000637439 ZBTB7BO15156 539 aaPredicted RBP21.91■■□□□ 1.1
CIITA-215ENST00000637439 EVI5O60447 810 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 POLA2Q14181 598 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 RRP1BQ14684 758 aaKnown RBP21.91■■□□□ 1.1
CIITA-215ENST00000637439 ZKSCAN2Q63HK3 967 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 FOXP4Q8IVH2 680 aaPredicted RBP21.91■■□□□ 1.1
CIITA-215ENST00000637439 ZNF512BQ96KM6 892 aaPredicted RBP21.91■■□□□ 1.1
CIITA-215ENST00000637439 TRIM34Q9BYJ4 488 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 CRISPLD2Q9H0B8 497 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 SNRKQ9NRH2 765 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 GINM1Q9NU53 330 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 TMOD4Q9NZQ9 345 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 TNNQ9UQP3 1299 aa21.91■■□□□ 1.1
CIITA-215ENST00000637439 HMGCRP04035 888 aa21.9■■□□□ 1.1
CIITA-215ENST00000637439 SSH3Q8TE77 659 aa21.9■■□□□ 1.1
CIITA-215ENST00000637439 XRN2Q9H0D6 950 aaKnown RBP eCLIP21.9■■□□□ 1.1
CIITA-215ENST00000637439 MORF4L1Q9UBU8 362 aa21.9■■□□□ 1.1
CIITA-215ENST00000637439 C19orf81C9J6K1 198 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 BACE1P56817 501 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 IRX3P78415 501 aaPredicted RBP21.89■■□□□ 1.09
CIITA-215ENST00000637439 ATP8B2P98198 1209 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 METTL16Q86W50 562 aaKnown RBP21.89■■□□□ 1.09
CIITA-215ENST00000637439 CRACR2BQ8N4Y2 399 aaPredicted RBP21.89■■□□□ 1.09
CIITA-215ENST00000637439 TMEM57Q8N5G2 664 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 ANKLE1Q8NAG6 615 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 TGFBRAP1Q8WUH2 860 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 DBNDD2Q9BQY9 259 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 PRO3102Q9H379 93 aa21.89■■□□□ 1.09
CIITA-215ENST00000637439 FLT1P17948 1338 aa21.88■■□□□ 1.09
CIITA-215ENST00000637439 SIPA1L1O43166 1804 aa21.88■■□□□ 1.09
CIITA-215ENST00000637439 A0A1W2PPC1 479 aa21.88■■□□□ 1.09
CIITA-215ENST00000637439 CYP2E1P05181 493 aaPredicted RBP21.88■■□□□ 1.09
CIITA-215ENST00000637439 HOXA7P31268 230 aaPredicted RBP21.88■■□□□ 1.09
CIITA-215ENST00000637439 MTMR2Q13614 643 aa21.88■■□□□ 1.09
CIITA-215ENST00000637439 NECAB2Q7Z6G3 386 aa21.88■■□□□ 1.09
CIITA-215ENST00000637439 MAPKAPK5Q8IW41 473 aa21.88■■□□□ 1.09
CIITA-215ENST00000637439 GJD2Q9UKL4 321 aa21.88■■□□□ 1.09
CIITA-215ENST00000637439 RANBP2P49792 3224 aaKnown RBP21.87■■□□□ 1.09
CIITA-215ENST00000637439 FOCADQ5VW36 1801 aa21.87■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms