RNA–Protein interactions for RNA: ENST00000622776.1

CPSF1-214, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 5

Gene CPSF1, Length 1,029 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-214ENST00000622776 UQCRFS1P1P0C7P4 283 aa29.28■■■□□ 2.28
CPSF1-214ENST00000622776 TREML2Q5T2D2 321 aa29.28■■■□□ 2.28
CPSF1-214ENST00000622776 DPF3Q92784 378 aa29.28■■■□□ 2.28
CPSF1-214ENST00000622776 UNC93B1Q9H1C4 597 aa29.28■■■□□ 2.28
CPSF1-214ENST00000622776 LRP2BPQ9P2M1 347 aa29.28■■■□□ 2.28
CPSF1-214ENST00000622776 COL2A1P02458 1487 aaPredicted RBP29.28■■■□□ 2.28
CPSF1-214ENST00000622776 DOCK3Q8IZD9 2030 aa29.27■■■□□ 2.28
CPSF1-214ENST00000622776 SPP2Q13103 211 aa29.27■■■□□ 2.28
CPSF1-214ENST00000622776 TEX11Q8IYF3 940 aa29.27■■■□□ 2.28
CPSF1-214ENST00000622776 U2AF1L4Q8WU68 220 aaKnown RBP29.27■■■□□ 2.28
CPSF1-214ENST00000622776 ELNP15502 786 aa29.26■■■□□ 2.27
CPSF1-214ENST00000622776 IRF5Q13568 498 aa29.26■■■□□ 2.27
CPSF1-214ENST00000622776 ANKRD13CQ8N6S4 541 aa29.26■■■□□ 2.27
CPSF1-214ENST00000622776 PROCA1Q8NCQ7 364 aaPredicted RBP29.26■■■□□ 2.27
CPSF1-214ENST00000622776 PNMA3Q9UL41 463 aa29.26■■■□□ 2.27
CPSF1-214ENST00000622776 CAP2P40123 477 aa29.25■■■□□ 2.27
CPSF1-214ENST00000622776 ZNF280CQ8ND82 737 aa29.25■■■□□ 2.27
CPSF1-214ENST00000622776 PXYLP1Q8TE99 480 aa29.25■■■□□ 2.27
CPSF1-214ENST00000622776 HTATIP2Q9BUP3 242 aa29.25■■■□□ 2.27
CPSF1-214ENST00000622776 RRP1BQ14684 758 aaKnown RBP29.24■■■□□ 2.27
CPSF1-214ENST00000622776 SH3RF3Q8TEJ3 882 aaPredicted RBP29.24■■■□□ 2.27
CPSF1-214ENST00000622776 TBC1D2Q9BYX2 928 aa29.24■■■□□ 2.27
CPSF1-214ENST00000622776 SGPL1O95470 568 aa29.23■■■□□ 2.27
CPSF1-214ENST00000622776 INHAP05111 366 aa29.23■■■□□ 2.27
CPSF1-214ENST00000622776 FAM110CQ1W6H9 321 aa29.23■■■□□ 2.27
CPSF1-214ENST00000622776 COA7Q96BR5 231 aa29.23■■■□□ 2.27
CPSF1-214ENST00000622776 NOL10Q9BSC4 688 aaKnown RBP29.23■■■□□ 2.27
CPSF1-214ENST00000622776 GPR108Q9NPR9 543 aa29.23■■■□□ 2.27
CPSF1-214ENST00000622776 SNRKQ9NRH2 765 aa29.23■■■□□ 2.27
CPSF1-214ENST00000622776 HERC5Q9UII4 1024 aaKnown RBP29.23■■■□□ 2.27
CPSF1-214ENST00000622776 USP17L5A8MUK1 530 aa29.22■■■□□ 2.27
CPSF1-214ENST00000622776 FARP2O94887 1054 aaPredicted RBP29.22■■■□□ 2.27
CPSF1-214ENST00000622776 HMGCS2P54868 508 aa29.22■■■□□ 2.27
CPSF1-214ENST00000622776 CHRDL2Q6WN34 429 aa29.22■■■□□ 2.27
CPSF1-214ENST00000622776 TMEM57Q8N5G2 664 aa29.22■■■□□ 2.27
CPSF1-214ENST00000622776 POLA2Q14181 598 aa29.21■■■□□ 2.27
CPSF1-214ENST00000622776 TNNI3KQ59H18 835 aa29.21■■■□□ 2.27
CPSF1-214ENST00000622776 TTC39AQ5SRH9 613 aa29.21■■■□□ 2.27
CPSF1-214ENST00000622776 NAA16Q6N069 864 aaPredicted RBP29.21■■■□□ 2.27
CPSF1-214ENST00000622776 PI4KBQ9UBF8 816 aa29.21■■■□□ 2.27
CPSF1-214ENST00000622776 TAOK2Q9UL54 1235 aa29.21■■■□□ 2.27
CPSF1-214ENST00000622776 FPGT-TNNI3KV9GXZ4 949 aa29.21■■■□□ 2.27
CPSF1-214ENST00000622776 BAG3O95817 575 aa29.2■■■□□ 2.26
CPSF1-214ENST00000622776 GCLCP48506 637 aaPredicted RBP29.2■■■□□ 2.26
CPSF1-214ENST00000622776 PABPC4Q13310 644 aaKnown RBP eCLIP29.2■■■□□ 2.26
CPSF1-214ENST00000622776 CCDC158Q5M9N0 1113 aa29.2■■■□□ 2.26
CPSF1-214ENST00000622776 ZKSCAN2Q63HK3 967 aa29.2■■■□□ 2.26
CPSF1-214ENST00000622776 DBNDD2Q9BQY9 259 aa29.2■■■□□ 2.26
CPSF1-214ENST00000622776 DHX36Q9H2U1 1008 aaKnown RBP29.2■■■□□ 2.26
CPSF1-214ENST00000622776 AATFQ9NY61 560 aaKnown RBP eCLIP29.2■■■□□ 2.26
CPSF1-214ENST00000622776 RANBP2P49792 3224 aaKnown RBP29.19■■■□□ 2.26
CPSF1-214ENST00000622776 OS9Q13438 667 aaPredicted RBP29.19■■■□□ 2.26
CPSF1-214ENST00000622776 SH3D19Q5HYK7 790 aa29.19■■■□□ 2.26
CPSF1-214ENST00000622776 AS3MTQ9HBK9 375 aa29.19■■■□□ 2.26
CPSF1-214ENST00000622776 PLCG2P16885 1265 aa29.18■■■□□ 2.26
CPSF1-214ENST00000622776 PPP4CP60510 307 aa29.18■■■□□ 2.26
CPSF1-214ENST00000622776 ATP8B2P98198 1209 aa29.18■■■□□ 2.26
CPSF1-214ENST00000622776 SSH3Q8TE77 659 aa29.18■■■□□ 2.26
CPSF1-214ENST00000622776 DEFB118Q96PH6 123 aa29.18■■■□□ 2.26
CPSF1-214ENST00000622776 ASCC2Q9H1I8 757 aaPredicted RBP29.18■■■□□ 2.26
CPSF1-214ENST00000622776 ATAD5Q96QE3 1844 aa29.17■■■□□ 2.26
CPSF1-214ENST00000622776 LOC285556D6RIA3 1793 aa29.17■■■□□ 2.26
CPSF1-214ENST00000622776 TFRCP02786 760 aaKnown RBP29.17■■■□□ 2.26
CPSF1-214ENST00000622776 CAPN2P17655 700 aa29.17■■■□□ 2.26
CPSF1-214ENST00000622776 TGFBRAP1Q8WUH2 860 aa29.17■■■□□ 2.26
CPSF1-214ENST00000622776 NR2E3Q9Y5X4 410 aa29.17■■■□□ 2.26
CPSF1-214ENST00000622776 CYP2E1P05181 493 aaPredicted RBP29.16■■■□□ 2.26
CPSF1-214ENST00000622776 MAPKAPK5Q8IW41 473 aa29.16■■■□□ 2.26
CPSF1-214ENST00000622776 WDR18Q9BV38 432 aa29.16■■■□□ 2.26
CPSF1-214ENST00000622776 PAK6Q9NQU5 681 aaPredicted RBP29.16■■■□□ 2.26
CPSF1-214ENST00000622776 SURF6O75683 361 aaKnown RBP29.15■■■□□ 2.26
CPSF1-214ENST00000622776 ADGRA1Q86SQ6 560 aa29.15■■■□□ 2.26
CPSF1-214ENST00000622776 ZNF512BQ96KM6 892 aaPredicted RBP29.15■■■□□ 2.26
CPSF1-214ENST00000622776 RBM27Q9P2N5 1060 aaKnown RBP29.15■■■□□ 2.26
CPSF1-214ENST00000622776 ASNSP08243 561 aa29.14■■■□□ 2.26
CPSF1-214ENST00000622776 FOXP4Q8IVH2 680 aaPredicted RBP29.14■■■□□ 2.26
CPSF1-214ENST00000622776 FLT1P17948 1338 aa29.14■■■□□ 2.25
CPSF1-214ENST00000622776 ZAP70P43403 619 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 BACE1P56817 501 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 JAG1P78504 1218 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 MTMR2Q13614 643 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 METTL16Q86W50 562 aaKnown RBP29.13■■■□□ 2.25
CPSF1-214ENST00000622776 CRISPLD2Q9H0B8 497 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 C1orf115Q9H7X2 142 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 DNAJC18Q9H819 358 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 GJD2Q9UKL4 321 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 SIPA1L1O43166 1804 aa29.13■■■□□ 2.25
CPSF1-214ENST00000622776 ZBTB7BO15156 539 aaPredicted RBP29.12■■■□□ 2.25
CPSF1-214ENST00000622776 IGSF3O75054 1194 aa29.12■■■□□ 2.25
CPSF1-214ENST00000622776 PIH1D3Q9NQM4 214 aaKnown RBP29.12■■■□□ 2.25
CPSF1-214ENST00000622776 TMOD4Q9NZQ9 345 aa29.12■■■□□ 2.25
CPSF1-214ENST00000622776 MORF4L1Q9UBU8 362 aa29.12■■■□□ 2.25
CPSF1-214ENST00000622776 PALD1Q9ULE6 856 aa29.12■■■□□ 2.25
CPSF1-214ENST00000622776 NOP58Q9Y2X3 529 aaKnown RBP29.12■■■□□ 2.25
CPSF1-214ENST00000622776 MAST2Q6P0Q8 1798 aa29.11■■■□□ 2.25
CPSF1-214ENST00000622776 IRX3P78415 501 aaPredicted RBP29.11■■■□□ 2.25
CPSF1-214ENST00000622776 CRACR2BQ8N4Y2 399 aaPredicted RBP29.11■■■□□ 2.25
CPSF1-214ENST00000622776 TRIM34Q9BYJ4 488 aa29.11■■■□□ 2.25
CPSF1-214ENST00000622776 XRN2Q9H0D6 950 aaKnown RBP eCLIP29.11■■■□□ 2.25
CPSF1-214ENST00000622776 HMGCRP04035 888 aa29.1■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 199.7 ms