RNA–Protein interactions for RNA: ENST00000616352.4

ACACA-238, Transcript of acetyl-CoA carboxylase alpha, human

TSL 1 (best)

Gene ACACA, Length 1,626 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ACACA-238	ENST00000616352	LDHD	Q86WU2	507 aa		27.33	■■□□□ 1.97
ACACA-238	ENST00000616352	SULF1	Q8IWU6	871 aa		27.33	■■□□□ 1.97
ACACA-238	ENST00000616352	IL17RA	Q96F46	866 aa		27.33	■■□□□ 1.97
ACACA-238	ENST00000616352	CSRNP1	Q96S65	589 aa		27.33	■■□□□ 1.97
ACACA-238	ENST00000616352	TACC3	Q9Y6A5	838 aa		27.33	■■□□□ 1.97
ACACA-238	ENST00000616352	FGR	P09769	529 aa		27.32	■■□□□ 1.96
ACACA-238	ENST00000616352	ZKSCAN1	P17029	563 aa	Predicted RBP	27.32	■■□□□ 1.96
ACACA-238	ENST00000616352	ANAPC15	P60006	121 aa		27.32	■■□□□ 1.96
ACACA-238	ENST00000616352	KRT26	Q7Z3Y9	468 aa		27.32	■■□□□ 1.96
ACACA-238	ENST00000616352	GPBP1L1	Q9HC44	474 aa	Predicted RBP	27.32	■■□□□ 1.96
ACACA-238	ENST00000616352	STOX1	Q6ZVD7	989 aa		27.31	■■□□□ 1.96
ACACA-238	ENST00000616352	STAG1	Q8WVM7	1258 aa		27.31	■■□□□ 1.96
ACACA-238	ENST00000616352	DYNLL2	Q96FJ2	89 aa		27.31	■■□□□ 1.96
ACACA-238	ENST00000616352	SERPINB13	Q9UIV8	391 aa		27.31	■■□□□ 1.96
ACACA-238	ENST00000616352	CLEC11A	Q9Y240	323 aa		27.31	■■□□□ 1.96
ACACA-238	ENST00000616352	ADM5	C9JUS6	153 aa		27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	AKNAD1	Q5T1N1	836 aa		27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	C16orf86	Q6ZW13	317 aa		27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	ATAD5	Q96QE3	1844 aa		27.3	■■□□□ 1.96
ACACA-238	ENST00000616352		E7EWF7	191 aa		27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	FOXP4	Q8IVH2	680 aa	Predicted RBP	27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	DNAJC18	Q9H819	358 aa		27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	TAOK2	Q9UL54	1235 aa		27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	27.3	■■□□□ 1.96
ACACA-238	ENST00000616352	SSC5D	A1L4H1	1573 aa		27.29	■■□□□ 1.96
ACACA-238	ENST00000616352	SLC3A2	P08195	630 aa	Known RBP	27.29	■■□□□ 1.96
ACACA-238	ENST00000616352	NBPF12	Q5TAG4	269 aa	Predicted RBP	27.29	■■□□□ 1.96
ACACA-238	ENST00000616352	CDC37L1	Q7L3B6	337 aa		27.29	■■□□□ 1.96
ACACA-238	ENST00000616352	INCENP	Q9NQS7	918 aa		27.29	■■□□□ 1.96
ACACA-238	ENST00000616352	TRPM7	Q96QT4	1865 aa		27.29	■■□□□ 1.96
ACACA-238	ENST00000616352	GREB1L	Q9C091	1923 aa	Predicted RBP	27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	SLURP2	P0DP57	97 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	PC	P11498	1178 aa	Known RBP	27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	MAP3K10	Q02779	954 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	ADCK5	Q3MIX3	580 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	PRAMEF18	Q5VWM3	479 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	MAP1S	Q66K74	1059 aa	Predicted RBP	27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	STK11IP	Q8N1F8	1099 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	SLC44A5	Q8NCS7	719 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	KIF2C	Q99661	725 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	RNF41	Q9H4P4	317 aa	Predicted RBP	27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	NEDD4	P46934	1319 aa		27.28	■■□□□ 1.96
ACACA-238	ENST00000616352	KRT32	Q14532	448 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	MFSD6	Q6ZSS7	791 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	USP48	Q86UV5	1035 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	GLIS2	Q9BZE0	524 aa	Predicted RBP	27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	SWAP70	Q9UH65	585 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	HERC5	Q9UII4	1024 aa	Known RBP	27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	PAPPA2	Q9BXP8	1791 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	ORC4	O43929	436 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	TBC1D12	O60347	775 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	YY1	P25490	414 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	CDK8	P49336	464 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	PDE4B	Q07343	736 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	DLK2	Q6UY11	383 aa		27.27	■■□□□ 1.96
ACACA-238	ENST00000616352	KIF3C	O14782	793 aa		27.26	■■□□□ 1.95
ACACA-238	ENST00000616352	SHMT1	P34896	483 aa		27.26	■■□□□ 1.95
ACACA-238	ENST00000616352	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	27.26	■■□□□ 1.95
ACACA-238	ENST00000616352	OTOF	Q9HC10	1997 aa		27.25	■■□□□ 1.95
ACACA-238	ENST00000616352	FAM196B	A6NMK8	535 aa		27.25	■■□□□ 1.95
ACACA-238	ENST00000616352	COL9A3	Q14050	684 aa	Predicted RBP	27.25	■■□□□ 1.95
ACACA-238	ENST00000616352	NKX2-3	Q8TAU0	364 aa		27.25	■■□□□ 1.95
ACACA-238	ENST00000616352	PRDM1	O75626	825 aa		27.24	■■□□□ 1.95
ACACA-238	ENST00000616352	CNNM2	Q9H8M5	875 aa		27.24	■■□□□ 1.95
ACACA-238	ENST00000616352	SUPT20HL1	Q3ZLR7	823 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	TATDN1	Q6P1N9	297 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	HOOK2	Q96ED9	719 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	CDCA5	Q96FF9	252 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	TM6SF1	Q9BZW5	370 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	ZNF287	Q9HBT7	754 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	DOCK1	Q14185	1865 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	CHADL	Q6NUI6	762 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	MIGA2	Q7L4E1	593 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	NCOA7	Q8NI08	942 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	JAKMIP1	Q96N16	626 aa	Known RBP	27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	NEK1	Q96PY6	1258 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	XPO5	Q9HAV4	1204 aa	Known RBP eCLIP	27.23	■■□□□ 1.95	2e-9	■■■■■ 48.2
ACACA-238	ENST00000616352	MKNK2	Q9HBH9	465 aa		27.23	■■□□□ 1.95
ACACA-238	ENST00000616352	RASA1	P20936	1047 aa		27.22	■■□□□ 1.95
ACACA-238	ENST00000616352	TRDN	Q13061	729 aa		27.22	■■□□□ 1.95
ACACA-238	ENST00000616352	MB21D2	Q8IYB1	491 aa	Predicted RBP	27.22	■■□□□ 1.95
ACACA-238	ENST00000616352	TRIM34	Q9BYJ4	488 aa		27.22	■■□□□ 1.95
ACACA-238	ENST00000616352	KRT23	Q9C075	422 aa		27.22	■■□□□ 1.95
ACACA-238	ENST00000616352		B4E1Z4	1266 aa		27.21	■■□□□ 1.95
ACACA-238	ENST00000616352	NT5C2	P49902	561 aa		27.21	■■□□□ 1.95
ACACA-238	ENST00000616352	ZNF784	Q8NCA9	323 aa	Predicted RBP	27.21	■■□□□ 1.95
ACACA-238	ENST00000616352	PSMA5	P28066	241 aa		27.2	■■□□□ 1.95
ACACA-238	ENST00000616352	RRP12	Q5JTH9	1297 aa	Known RBP	27.2	■■□□□ 1.95
ACACA-238	ENST00000616352	DCAF15	Q66K64	600 aa		27.2	■■□□□ 1.95
ACACA-238	ENST00000616352	RALYL	Q86SE5	291 aa	Known RBP	27.2	■■□□□ 1.95
ACACA-238	ENST00000616352	ZSWIM6	Q9HCJ5	1215 aa		27.2	■■□□□ 1.95
ACACA-238	ENST00000616352	TOMM22	Q9NS69	142 aa		27.2	■■□□□ 1.95
ACACA-238	ENST00000616352	MYH4	Q9Y623	1939 aa		27.19	■■□□□ 1.94
ACACA-238	ENST00000616352	CAST	P20810	708 aa	Known RBP	27.19	■■□□□ 1.94
ACACA-238	ENST00000616352	ESR2	Q92731	530 aa		27.19	■■□□□ 1.94
ACACA-238	ENST00000616352	PHF20L1	A8MW92	1017 aa		27.19	■■□□□ 1.94
ACACA-238	ENST00000616352	TRAF5	O00463	557 aa		27.19	■■□□□ 1.94
ACACA-238	ENST00000616352	KDM4A	O75164	1064 aa		27.19	■■□□□ 1.94
ACACA-238	ENST00000616352	RRP1B	Q14684	758 aa	Known RBP	27.19	■■□□□ 1.94
ACACA-238	ENST00000616352	ZSWIM5	Q9P217	1185 aa		27.19	■■□□□ 1.94

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms