RNA–Protein interactions for RNA: ENST00000611712.4

LIG4-204, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 4 BASIC

Gene LIG4, Length 4,180 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-204ENST00000611712 DENND2AQ9ULE3 1009 aa9.88□□□□□ -0.83
LIG4-204ENST00000611712 RIMS1Q86UR5 1692 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 AKR1B15C9JRZ8 316 aaPredicted RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 ARHGAP6O43182 974 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 CTDNEP1O95476 244 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 GYG1P46976 350 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 PTPN21Q16825 1174 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 NOM1Q5C9Z4 860 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 HEATR3Q7Z4Q2 680 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 TBC1D10CQ8IV04 446 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 IGSF22Q8N9C0 903 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG4-204ENST00000611712 CARD6Q9BX69 1037 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 RBM28Q9NW13 759 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP9.87□□□□□ -0.83
LIG4-204ENST00000611712 PPP6R2O75170 966 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 TSPY3P0CV98 308 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 TSPY8P0CW00 308 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 CALML3P27482 149 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 CCT6AP40227 531 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 MTIF2P46199 727 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 PIK3AP1Q6ZUJ8 805 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 RUFY1Q96T51 708 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 GTPBP4Q9BZE4 634 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 TNKSO95271 1327 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 ADKP55263 362 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 STRBPQ96SI9 672 aaKnown RBP9.87□□□□□ -0.83
LIG4-204ENST00000611712 ARFGAP3Q9NP61 516 aa9.87□□□□□ -0.83
LIG4-204ENST00000611712 AP5Z1O43299 807 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 LDHCP07864 332 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 ATP1A3P13637 1013 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 EVCP57679 992 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 COL9A3Q14050 684 aaPredicted RBP9.86□□□□□ -0.83
LIG4-204ENST00000611712 ERCC6LQ2NKX8 1250 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 TTC38Q5R3I4 469 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 MEX3CQ5U5Q3 659 aaKnown RBP9.86□□□□□ -0.83
LIG4-204ENST00000611712 CYB5R4Q7L1T6 521 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 PLIN2Q99541 437 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 MAPK8IP1Q9UQF2 711 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 IL6STP40189 918 aaPredicted RBP9.86□□□□□ -0.83
LIG4-204ENST00000611712 ETF1P62495 437 aaKnown RBP9.86□□□□□ -0.83
LIG4-204ENST00000611712 RASGRF1Q13972 1273 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 IQCB1Q15051 598 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 FKBP15Q5T1M5 1219 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 SPECC1LQ69YQ0 1117 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 TIGD1Q96MW7 591 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 BMP2KQ9NSY1 1161 aaPredicted RBP9.86□□□□□ -0.83
LIG4-204ENST00000611712 AATFQ9NY61 560 aaKnown RBP eCLIP9.86□□□□□ -0.83
LIG4-204ENST00000611712 USP17L12C9JPN9 530 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 USP17L21D6R901 530 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 IDEP14735 1019 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 GNAQP50148 359 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 CHRNDQ07001 517 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 NR5A1Q13285 461 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 PPP2R5BQ15173 497 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 LEKR1Q6ZMV7 388 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 TFCP2L1Q9NZI6 479 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 ARHGAP23Q9P227 1491 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 KNDC1Q76NI1 1749 aa9.86□□□□□ -0.83
LIG4-204ENST00000611712 IKBKBO14920 756 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 GOLGA8FQ08AF8 430 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 GOLGA8DPQ0D2H9 430 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 SPA17Q15506 151 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 LONRF3Q496Y0 759 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 ZNF569Q5MCW4 686 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 LCORLQ8N3X6 602 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 CCDC24Q8N4L8 307 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 NGLY1Q96IV0 654 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 GBP3Q9H0R5 595 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 VPS16Q9H269 839 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 SLIT1O75093 1534 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 IFNAR1P17181 557 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 TRIM21P19474 475 aaKnown RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 TRIM28Q13263 835 aaKnown RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 SKIDA1Q1XH10 827 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 CCDC181Q5TID7 509 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 CWC15Q9P013 229 aaKnown RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 PUF60Q9UHX1 559 aaKnown RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 CTNND2Q9UQB3 1225 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 TNS3Q68CZ2 1445 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 SYNRGQ9UMZ2 1314 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 PSMA7O14818 248 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 FMNL1O95466 1100 aaPredicted RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 FDPSP14324 419 aaKnown RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 HIBADHP31937 336 aaKnown RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 LIFRP42702 1097 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 CCDC178Q5BJE1 867 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 FAM47AQ5JRC9 791 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 PPP1R13BQ96KQ4 1090 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 RNF216Q9NWF9 866 aaPredicted RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 PEAK1Q9H792 1746 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 PSDA5PKW4 1024 aaPredicted RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 KIF28PB7ZC32 967 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 GTF2F1P35269 517 aaKnown RBP eCLIP9.85□□□□□ -0.832e-26■■■■■ 105.6
LIG4-204ENST00000611712 UBXN1Q04323 297 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 AXDND1Q5T1B0 1012 aaPredicted RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 TPTE2Q6XPS3 522 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 DTHD1Q6ZMT9 781 aa9.85□□□□□ -0.83
LIG4-204ENST00000611712 DHX40Q8IX18 779 aaKnown RBP9.85□□□□□ -0.83
LIG4-204ENST00000611712 GOLGA1Q92805 767 aa9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms