RNA–Protein interactions for RNA: ENST00000594092.5

VRK3-207, Transcript of vaccinia related kinase 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VRK3, Length 1,831 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-207ENST00000594092 NFKBIBQ15653 356 aa17.87■□□□□ 0.45
VRK3-207ENST00000594092 DYNLL2Q96FJ2 89 aa17.87■□□□□ 0.45
VRK3-207ENST00000594092 ANGEL1Q9UNK9 670 aaKnown RBP17.87■□□□□ 0.45
VRK3-207ENST00000594092 NFIAQ12857 509 aa17.86■□□□□ 0.45
VRK3-207ENST00000594092 OGFOD1Q8N543 542 aa17.86■□□□□ 0.45
VRK3-207ENST00000594092 ZNF274Q96GC6 653 aaPredicted RBP17.86■□□□□ 0.45
VRK3-207ENST00000594092 RANBP6O60518 1105 aaKnown RBP17.86■□□□□ 0.45
VRK3-207ENST00000594092 PFKFB2O60825 505 aa17.86■□□□□ 0.45
VRK3-207ENST00000594092 GTF3C6Q969F1 213 aa17.86■□□□□ 0.45
VRK3-207ENST00000594092 PRMT6Q96LA8 375 aaPredicted RBP17.86■□□□□ 0.45
VRK3-207ENST00000594092 MTA3Q9BTC8 594 aa17.86■□□□□ 0.45
VRK3-207ENST00000594092 IDI2Q9BXS1 227 aa17.86■□□□□ 0.45
VRK3-207ENST00000594092 OSBPL5Q9H0X9 879 aaPredicted RBP17.86■□□□□ 0.45
VRK3-207ENST00000594092 LY9Q9HBG7 655 aa17.86■□□□□ 0.45
VRK3-207ENST00000594092 ZSCAN21Q9Y5A6 473 aaPredicted RBP17.86■□□□□ 0.45
VRK3-207ENST00000594092 SPDYE2BA6NHP3 402 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 IFIT3O14879 490 aaKnown RBP17.85■□□□□ 0.45
VRK3-207ENST00000594092 SPDYE6P0CI01 402 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 PDIA3P30101 505 aaKnown RBP17.85■□□□□ 0.45
VRK3-207ENST00000594092 CACNB3P54284 484 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 EIF6P56537 245 aaKnown RBP17.85■□□□□ 0.45
VRK3-207ENST00000594092 NUCB2P80303 420 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 RAB3GAP1Q15042 981 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 TMEM67Q5HYA8 995 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 ZKSCAN3Q9BRR0 538 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 TDRD3Q9H7E2 651 aaKnown RBP17.85■□□□□ 0.45
VRK3-207ENST00000594092 SENP2Q9HC62 589 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 BRPF3Q9ULD4 1205 aa17.85■□□□□ 0.45
VRK3-207ENST00000594092 KLF18A0A0U1RQI7 1052 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 LIFRP42702 1097 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 NAP1L2Q9ULW6 460 aaPredicted RBP17.84■□□□□ 0.45
VRK3-207ENST00000594092 NPM3O75607 178 aaKnown RBP17.84■□□□□ 0.45
VRK3-207ENST00000594092 LMNB1P20700 586 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 RPS12P25398 132 aaKnown RBP17.84■□□□□ 0.45
VRK3-207ENST00000594092 SCRN1Q12765 414 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 SART3Q15020 963 aaKnown RBP17.84■□□□□ 0.45
VRK3-207ENST00000594092 DLGAP5Q15398 846 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 C16orf86Q6ZW13 317 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 SGMS1Q86VZ5 419 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 MTMR14Q8NCE2 650 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 SLC44A5Q8NCS7 719 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 FAM198AQ9UFP1 575 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 UTRNP46939 3433 aa17.84■□□□□ 0.45
VRK3-207ENST00000594092 YBX3P16989 372 aaKnown RBP eCLIP17.83■□□□□ 0.444e-7■■□□□ 11.9
VRK3-207ENST00000594092 FAM47AQ5JRC9 791 aa17.83■□□□□ 0.44
VRK3-207ENST00000594092 TTC6Q86TZ1 520 aa17.83■□□□□ 0.44
VRK3-207ENST00000594092 ZFPM1Q8IX07 1006 aa17.83■□□□□ 0.44
VRK3-207ENST00000594092 UBAC1Q9BSL1 405 aa17.83■□□□□ 0.44
VRK3-207ENST00000594092 MKNK2Q9HBH9 465 aa17.83■□□□□ 0.44
VRK3-207ENST00000594092 SMC3Q9UQE7 1217 aa17.83■□□□□ 0.44
VRK3-207ENST00000594092 CDK8P49336 464 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 NT5C2P49902 561 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 WTAPQ15007 396 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 SEC23AQ15436 765 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 HPS5Q9UPZ3 1129 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 TNKSO95271 1327 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 ZNF541Q9H0D2 1346 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 SHTN1A0MZ66 631 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 ERICH2A1L162 156 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 GOLGA8BA8MQT2 603 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 DTNBO60941 627 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 CCT2P78371 535 aaKnown RBP17.82■□□□□ 0.44
VRK3-207ENST00000594092 GABPAQ06546 454 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 TCP10Q12799 353 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 IQCA1Q86XH1 822 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 ZBED3Q96IU2 234 aaPredicted RBP17.82■□□□□ 0.44
VRK3-207ENST00000594092 ZSCAN10Q96SZ4 725 aaPredicted RBP17.82■□□□□ 0.44
VRK3-207ENST00000594092 ZNF287Q9HBT7 754 aa17.82■□□□□ 0.44
VRK3-207ENST00000594092 DICER1Q9UPY3 1922 aaKnown RBP17.82■□□□□ 0.44
VRK3-207ENST00000594092 SBF1O95248 1867 aa17.81■□□□□ 0.44
VRK3-207ENST00000594092 RASA1P20936 1047 aa17.81■□□□□ 0.44
VRK3-207ENST00000594092 GMPSP49915 693 aaPredicted RBP17.81■□□□□ 0.44
VRK3-207ENST00000594092 MMP14P50281 582 aa17.81■□□□□ 0.44
VRK3-207ENST00000594092 ZNF280AP59817 542 aaPredicted RBP17.81■□□□□ 0.44
VRK3-207ENST00000594092 APOA5Q6Q788 366 aa17.81■□□□□ 0.44
VRK3-207ENST00000594092 NFXL1Q6ZNB6 911 aa17.81■□□□□ 0.44
VRK3-207ENST00000594092 ENAHQ8N8S7 591 aaPredicted RBP17.81■□□□□ 0.44
VRK3-207ENST00000594092 DPF2Q92785 391 aa17.81■□□□□ 0.44
VRK3-207ENST00000594092 NCOA5Q9HCD5 579 aaKnown RBP17.81■□□□□ 0.44
VRK3-207ENST00000594092 GJA3Q9Y6H8 435 aa17.81■□□□□ 0.44
VRK3-207ENST00000594092 TSPY2A6NKD2 308 aa17.8■□□□□ 0.44
VRK3-207ENST00000594092 GJB2P29033 226 aa17.8■□□□□ 0.44
VRK3-207ENST00000594092 TFAP4Q01664 338 aa17.8■□□□□ 0.44
VRK3-207ENST00000594092 ZNF444Q8N0Y2 327 aaPredicted RBP17.8■□□□□ 0.44
VRK3-207ENST00000594092 TMTC2Q8N394 836 aa17.8■□□□□ 0.44
VRK3-207ENST00000594092 TNPO1Q92973 898 aaKnown RBP17.8■□□□□ 0.44
VRK3-207ENST00000594092 DHX36Q9H2U1 1008 aaKnown RBP17.8■□□□□ 0.44
VRK3-207ENST00000594092 MYOZ2Q9NPC6 264 aa17.8■□□□□ 0.44
VRK3-207ENST00000594092 ZNF70Q9UC06 446 aaPredicted RBP17.8■□□□□ 0.44
VRK3-207ENST00000594092 CLRN2A0PK11 232 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 CCDC69A6NI79 296 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 ENTPD3O75355 529 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 HLA-DOAP06340 250 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 PKP1Q13835 747 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 SPDYE2Q495Y8 402 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 SH3BP5LQ7L8J4 393 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 RAB11FIP4Q86YS3 637 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 TMOD2Q9NZR1 351 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 SERPINB13Q9UIV8 391 aa17.79■□□□□ 0.44
VRK3-207ENST00000594092 DDTLA6NHG4 134 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms