RNA–Protein interactions for RNA: ENST00000559937.1

SMAD3-212, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 579 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-212ENST00000559937 BRWD3Q6RI45 1802 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 ORC4O43929 436 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 NEMFO60524 1076 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 MMP1P03956 469 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 POLR3DP05423 398 aaPredicted RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 CALM1P0DP23 149 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 CALM2P0DP24 149 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 CALM3P0DP25 149 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 NDUFA8P51970 172 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 SF3B2Q13435 895 aaKnown RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 NOLC1Q14978 699 aaKnown RBP eCLIP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 ZRSR1Q15695 479 aaKnown RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 SPTY2D1Q68D10 685 aaPredicted RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 C11orf57Q6ZUT1 292 aaPredicted RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 C3orf67Q6ZVT6 689 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 NBPF5PQ86XG9 351 aaPredicted RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 RAB11FIP4Q86YS3 637 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 CRACR2BQ8N4Y2 399 aaPredicted RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 NKX2-3Q8TAU0 364 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 KIAA1524Q8TCG1 905 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 PRIMPOLQ96LW4 560 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 UBAC1Q9BSL1 405 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 GNL3Q9BVP2 549 aaKnown RBP eCLIP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 SLC26A6Q9BXS9 759 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 CRNKL1Q9BZJ0 848 aaKnown RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 FOXP1Q9H334 677 aaPredicted RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 ATP8A2Q9NTI2 1148 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 RBM28Q9NW13 759 aaKnown RBP9.35□□□□□ -0.91
SMAD3-212ENST00000559937 HPSEQ9Y251 543 aa9.35□□□□□ -0.91
SMAD3-212ENST00000559937 DDX52Q9Y2R4 599 aaKnown RBP eCLIP9.35□□□□□ -0.917e-6■■□□□ 13
SMAD3-212ENST00000559937 IRS2Q9Y4H2 1338 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 DDX60LQ5H9U9 1706 aaKnown RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 A0A1B0GVL5 298 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 BECN2A8MW95 431 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 MYO1BO43795 1136 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 DDAH1O94760 285 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 ZNF202O95125 648 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 SLC3A2P08195 630 aaKnown RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 PFKFB1P16118 471 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 XBP1P17861 261 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 ADRA2BP18089 450 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 HIBADHP31937 336 aaKnown RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 NLRP12P59046 1061 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 TPM4P67936 248 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 SBK1Q52WX2 424 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 RILPL1Q5EBL4 403 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 RESP18Q5W5W9 173 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 C15orf52Q6ZUT6 534 aaKnown RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 ADGRA1Q86SQ6 560 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 NBPF11Q86T75 865 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 CERS3Q8IU89 383 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 NOSTRINQ8IVI9 506 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 MIGA1Q8NAN2 632 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 FANCBQ8NB91 859 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 CELF1Q92879 486 aaKnown RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 PHKBQ93100 1093 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 NSUN4Q96CB9 384 aaKnown RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 AIFM3Q96NN9 605 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 MAP3K14Q99558 947 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 TTC12Q9H892 705 aaPredicted RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 TOMM22Q9NS69 142 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.34□□□□□ -0.91
SMAD3-212ENST00000559937 ABCF2Q9UG63 623 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 LEMD3Q9Y2U8 911 aa9.34□□□□□ -0.91
SMAD3-212ENST00000559937 MROH7-TTC4A0A0A0MT08 1334 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 TNKSO95271 1327 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 SMTNL1A8MU46 457 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 IKBKBO14920 756 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 GNPATO15228 680 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 PPFIA3O75145 1194 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 RXRAP19793 462 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 HMGB2P26583 209 aaKnown RBP9.33□□□□□ -0.92
SMAD3-212ENST00000559937 SYKP43405 635 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 RRP12Q5JTH9 1297 aaKnown RBP9.33□□□□□ -0.92
SMAD3-212ENST00000559937 FAM182BQ5T319 152 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 IQCA1Q86XH1 822 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 DHX40Q8IX18 779 aaKnown RBP9.33□□□□□ -0.92
SMAD3-212ENST00000559937 MYL10Q9BUA6 226 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 KCNF1Q9H3M0 494 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 INCENPQ9NQS7 918 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 GJB4Q9NTQ9 266 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 ARPP21Q9UBL0 812 aaPredicted RBP9.33□□□□□ -0.92
SMAD3-212ENST00000559937 TUBE1Q9UJT0 475 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 CCNL1Q9UK58 526 aaPredicted RBP9.33□□□□□ -0.92
SMAD3-212ENST00000559937 CEP131Q9UPN4 1083 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 R3HCC1Q9Y3T6 440 aaKnown RBP9.33□□□□□ -0.92
SMAD3-212ENST00000559937 MYH1P12882 1939 aa9.33□□□□□ -0.92
SMAD3-212ENST00000559937 LTBP1Q14766 1721 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 MINDY4BA8MYZ0 360 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 DYNC1I1O14576 645 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 PRPF3O43395 683 aaKnown RBP9.32□□□□□ -0.92
SMAD3-212ENST00000559937 WDHD1O75717 1129 aaPredicted RBP9.32□□□□□ -0.92
SMAD3-212ENST00000559937 BMP15O95972 392 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 TM4SF1P30408 202 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 DYNLL1P63167 89 aaKnown RBP9.32□□□□□ -0.92
SMAD3-212ENST00000559937 AKAP17AQ02040 695 aaKnown RBP9.32□□□□□ -0.92
SMAD3-212ENST00000559937 MECOMQ03112 1051 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 CCDC178Q5BJE1 867 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 BICDL1Q6ZP65 573 aa9.32□□□□□ -0.92
SMAD3-212ENST00000559937 CATIPQ7Z7H3 387 aa9.32□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 83.6 ms