RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 FANCBQ8NB91 859 aa16.94■□□□□ 0.3
CUX1-215ENST00000556210 RPGRQ92834 1020 aaKnown RBP16.94■□□□□ 0.3
CUX1-215ENST00000556210 YEATS4O95619 227 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 TDRD7Q8NHU6 1098 aaKnown RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 RASGRP4Q8TDF6 673 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 STRBPQ96SI9 672 aaKnown RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 SRP68Q9UHB9 627 aaKnown RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 GOLGA8HP0CJ92 632 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 ZSCAN20P17040 1043 aaPredicted RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 EXOSC10Q01780 885 aaKnown RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 NOSTRINQ8IVI9 506 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 BBXQ8WY36 941 aaPredicted RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 NCAPD2Q15021 1401 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 WTIPA6NIX2 430 aaPredicted RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 NLRP12P59046 1061 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 ERFEQ4G0M1 354 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 USPL1Q5W0Q7 1092 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 PRDM4Q9UKN5 801 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 CASQ1P31415 396 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 BMS1Q14692 1282 aaKnown RBP16.93■□□□□ 0.3
CUX1-215ENST00000556210 TMTC2Q8N394 836 aa16.93■□□□□ 0.3
CUX1-215ENST00000556210 UTYO14607 1347 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 GPKOWQ92917 476 aaPredicted RBP eCLIP16.92■□□□□ 0.37e-6■□□□□ 10
CUX1-215ENST00000556210 NMT2O60551 498 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 HIBADHP31937 336 aaKnown RBP16.92■□□□□ 0.3
CUX1-215ENST00000556210 MAPKAPK5Q8IW41 473 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 ZFP91Q96JP5 570 aaPredicted RBP16.92■□□□□ 0.3
CUX1-215ENST00000556210 PCDHB6Q9Y5E3 794 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 ZMYM6O95789 1325 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 MROH5Q6ZUA9 1318 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 DEXIO95424 95 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 KRT2P35908 639 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 NCBP1Q09161 790 aaKnown RBP16.92■□□□□ 0.3
CUX1-215ENST00000556210 CCDC150Q8NCX0 1101 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 PUF60Q9UHX1 559 aaKnown RBP16.92■□□□□ 0.3
CUX1-215ENST00000556210 RIPOR2Q9Y4F9 1068 aa16.92■□□□□ 0.3
CUX1-215ENST00000556210 CCP110O43303 1012 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 KRT18P05783 430 aaKnown RBP16.91■□□□□ 0.3
CUX1-215ENST00000556210 CYP19A1P11511 503 aaPredicted RBP16.91■□□□□ 0.3
CUX1-215ENST00000556210 UBE3CQ15386 1083 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 TPTE2Q6XPS3 522 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 AK7Q96M32 723 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 BAZ2BQ9UIF8 2168 aaKnown RBP16.91■□□□□ 0.3
CUX1-215ENST00000556210 ANTXR2P58335 489 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 FAM193AP78312 1265 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 CCDC178Q5BJE1 867 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 MB21D2Q8IYB1 491 aaPredicted RBP16.91■□□□□ 0.3
CUX1-215ENST00000556210 OXER1Q8TDS5 423 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 SH2B2O14492 632 aaPredicted RBP16.91■□□□□ 0.3
CUX1-215ENST00000556210 ZSCAN12O43309 604 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 WDHD1O75717 1129 aaPredicted RBP16.91■□□□□ 0.3
CUX1-215ENST00000556210 SLC39A14Q15043 492 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 POSTNQ15063 836 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 SMARCC2Q8TAQ2 1214 aa16.91■□□□□ 0.3
CUX1-215ENST00000556210 CMA1P23946 247 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 CCDC96Q2M329 555 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 ATL3Q6DD88 541 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 KLHL34Q8N239 644 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 CPVLQ9H3G5 476 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 PEAK1Q9H792 1746 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 KNDC1Q76NI1 1749 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 GNAT2P19087 354 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 ERCC6LQ2NKX8 1250 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 RILPL1Q5EBL4 403 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 COL15A1P39059 1388 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 STAT6P42226 847 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 RPS8P62241 208 aaKnown RBP16.9■□□□□ 0.3
CUX1-215ENST00000556210 TFAP4Q01664 338 aa16.9■□□□□ 0.3
CUX1-215ENST00000556210 UBAP1LF5GYI3 381 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 ERO1AQ96HE7 468 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 EPSTI1Q96J88 318 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 DRC1Q96MC2 740 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 SEC63Q9UGP8 760 aaKnown RBP16.89■□□□□ 0.29
CUX1-215ENST00000556210 REREQ9P2R6 1566 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 TSGA10IPQ3SY00 556 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 TGFBRAP1Q8WUH2 860 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.89■□□□□ 0.29
CUX1-215ENST00000556210 DEF6Q9H4E7 631 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 CALCOCO1Q9P1Z2 691 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 RTCBQ9Y3I0 505 aaKnown RBP16.89■□□□□ 0.29
CUX1-215ENST00000556210 SMIM22K7EJ46 135 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 LETM2Q2VYF4 491 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 TIGD1Q96MW7 591 aa16.89■□□□□ 0.29
CUX1-215ENST00000556210 FAM205CA6NFA0 338 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 IL6STP40189 918 aaPredicted RBP16.88■□□□□ 0.29
CUX1-215ENST00000556210 GABPB1Q06547 395 aaPredicted RBP16.88■□□□□ 0.29
CUX1-215ENST00000556210 STIM1Q13586 685 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 GOLGA6L1Q8N7Z2 621 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 TRIM47Q96LD4 638 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 CUTAO60888 179 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 CYP2D6P10635 497 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 CARD6Q9BX69 1037 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 CSRNP2Q9H175 543 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 CCNL1Q9UK58 526 aaPredicted RBP16.88■□□□□ 0.29
CUX1-215ENST00000556210 CTNND2Q9UQB3 1225 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 LMTK3Q96Q04 1460 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 PLEKHA8P1O95397 391 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 LDHBP07195 334 aaKnown RBP16.88■□□□□ 0.29
CUX1-215ENST00000556210 KIF5BP33176 963 aa16.88■□□□□ 0.29
CUX1-215ENST00000556210 CASP7P55210 303 aa16.88■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms