RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 BUD31P41223 144 aaPredicted RBP6.87□□□□□ -1.31
VPS29-205ENST00000548539 MAPK8P45983 427 aa6.87□□□□□ -1.31
VPS29-205ENST00000548539 EAPPQ56P03 285 aaPredicted RBP6.87□□□□□ -1.31
VPS29-205ENST00000548539 PRR23BQ6ZRT6 265 aa6.87□□□□□ -1.31
VPS29-205ENST00000548539 TOP6BLQ8N6T0 577 aa6.87□□□□□ -1.31
VPS29-205ENST00000548539 MRRFQ96E11 262 aaKnown RBP6.87□□□□□ -1.31
VPS29-205ENST00000548539 RAPGEFL1Q9UHV5 662 aa6.87□□□□□ -1.31
VPS29-205ENST00000548539 TREHO43280 583 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 ZNF862O60290 1169 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 C1QTNF9P0C862 333 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 KIF4BQ2VIQ3 1234 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 ZNF326Q5BKZ1 582 aaKnown RBP6.86□□□□□ -1.31
VPS29-205ENST00000548539 FYB2Q5VWT5 728 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 FAM129BQ96TA1 746 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 KRTAP9-8Q9BYQ0 159 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 NIF3L1Q9GZT8 377 aa6.86□□□□□ -1.31
VPS29-205ENST00000548539 PLCB3Q01970 1234 aa6.85□□□□□ -1.31
VPS29-205ENST00000548539 PTPN12Q05209 780 aaKnown RBP6.85□□□□□ -1.31
VPS29-205ENST00000548539 PDE3BQ13370 1112 aa6.85□□□□□ -1.31
VPS29-205ENST00000548539 TMEM67Q5HYA8 995 aa6.85□□□□□ -1.31
VPS29-205ENST00000548539 KIRREL1Q96J84 757 aa6.85□□□□□ -1.31
VPS29-205ENST00000548539 DMRTB1Q96MA1 342 aa6.85□□□□□ -1.31
VPS29-205ENST00000548539 HEXIM2Q96MH2 286 aaKnown RBP6.85□□□□□ -1.31
VPS29-205ENST00000548539 CITED4Q96RK1 184 aa6.85□□□□□ -1.31
VPS29-205ENST00000548539 KIAA1522Q9P206 1035 aaPredicted RBP6.85□□□□□ -1.31
VPS29-205ENST00000548539 GTF2IRD1Q9UHL9 959 aa6.85□□□□□ -1.31
VPS29-205ENST00000548539 IGHA2P01877 340 aa6.84□□□□□ -1.31
VPS29-205ENST00000548539 ZNF157P51786 506 aaPredicted RBP6.84□□□□□ -1.31
VPS29-205ENST00000548539 FMR1Q06787 632 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS29-205ENST00000548539 DSC3Q14574 896 aa6.84□□□□□ -1.31
VPS29-205ENST00000548539 RPS26P11Q5JNZ5 115 aaPredicted RBP6.84□□□□□ -1.31
VPS29-205ENST00000548539 PHF6Q8IWS0 365 aaKnown RBP eCLIP6.84□□□□□ -1.31
VPS29-205ENST00000548539 KRT82Q9NSB4 513 aa6.84□□□□□ -1.31
VPS29-205ENST00000548539 PCDHGC5Q9Y5F6 944 aa6.84□□□□□ -1.31
VPS29-205ENST00000548539 NEFLP07196 543 aa6.83□□□□□ -1.32
VPS29-205ENST00000548539 GSTP1P09211 210 aaKnown RBP6.83□□□□□ -1.32
VPS29-205ENST00000548539 USPL1Q5W0Q7 1092 aa6.83□□□□□ -1.32
VPS29-205ENST00000548539 CYFIP1Q7L576 1253 aa6.83□□□□□ -1.32
VPS29-205ENST00000548539 AMIGO3Q86WK7 504 aa6.83□□□□□ -1.32
VPS29-205ENST00000548539 FBXO15Q8NCQ5 510 aaPredicted RBP6.83□□□□□ -1.32
VPS29-205ENST00000548539 SETDB2Q96T68 719 aa6.83□□□□□ -1.32
VPS29-205ENST00000548539 WWC3Q9ULE0 1092 aa6.83□□□□□ -1.32
VPS29-205ENST00000548539 KRT1P04264 644 aa6.82□□□□□ -1.32
VPS29-205ENST00000548539 SPACA3Q8IXA5 215 aa6.82□□□□□ -1.32
VPS29-205ENST00000548539 ISL2Q96A47 359 aa6.82□□□□□ -1.32
VPS29-205ENST00000548539 KRTAP9-3Q9BYQ3 159 aa6.82□□□□□ -1.32
VPS29-205ENST00000548539 RNF19AQ9NV58 838 aa6.82□□□□□ -1.32
VPS29-205ENST00000548539 PNMA6FA0A0J9YX94 578 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 NPIPB6E9PJ23 425 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 IGF2BP3O00425 579 aaKnown RBP eCLIP6.81□□□□□ -1.32
VPS29-205ENST00000548539 LDHBP07195 334 aaKnown RBP6.81□□□□□ -1.32
VPS29-205ENST00000548539 NEFMP07197 916 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 TMEM253P0C7T8 217 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 ORC1Q13415 861 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 FAM214BQ7L5A3 538 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 FAM161BQ96MY7 647 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 DIRC2Q96SL1 478 aa6.81□□□□□ -1.32
VPS29-205ENST00000548539 INHBBP09529 407 aa6.8□□□□□ -1.32
VPS29-205ENST00000548539 CTSWP56202 376 aa6.8□□□□□ -1.32
VPS29-205ENST00000548539 NKPD1Q17RQ9 610 aa6.8□□□□□ -1.32
VPS29-205ENST00000548539 RNF214Q8ND24 703 aa6.8□□□□□ -1.32
VPS29-205ENST00000548539 KCNB2Q92953 911 aa6.8□□□□□ -1.32
VPS29-205ENST00000548539 ALKBH8Q96BT7 664 aaKnown RBP6.8□□□□□ -1.32
VPS29-205ENST00000548539 NSUN3Q9H649 340 aaKnown RBP6.8□□□□□ -1.32
VPS29-205ENST00000548539 ABCB6Q9NP58 842 aa6.8□□□□□ -1.32
VPS29-205ENST00000548539 NPHS2Q9NP85 383 aa6.8□□□□□ -1.32
VPS29-205ENST00000548539 GNAT3A8MTJ3 354 aa6.79□□□□□ -1.32
VPS29-205ENST00000548539 CLCN7P51798 805 aa6.79□□□□□ -1.32
VPS29-205ENST00000548539 FAAP100Q0VG06 881 aa6.79□□□□□ -1.32
VPS29-205ENST00000548539 DUSP9Q99956 384 aaKnown RBP6.79□□□□□ -1.32
VPS29-205ENST00000548539 PITPNM2Q9BZ72 1349 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 TMEM238LA0A1B0GVL6 79 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 ATP2B2Q01814 1243 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 PPP2R3AQ06190 1150 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 ENOX2Q16206 610 aaKnown RBP6.78□□□□□ -1.32
VPS29-205ENST00000548539 CIAPIN1Q6FI81 312 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 PRPF40BQ6NWY9 871 aaKnown RBP6.78□□□□□ -1.32
VPS29-205ENST00000548539 CSRNP1Q96S65 589 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 CARS2Q9HA77 564 aaKnown RBP6.78□□□□□ -1.32
VPS29-205ENST00000548539 PRDM10Q9NQV6 1147 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 PARP2Q9UGN5 583 aa6.78□□□□□ -1.32
VPS29-205ENST00000548539 EIF1AYO14602 144 aaKnown RBP6.77□□□□□ -1.33
VPS29-205ENST00000548539 CPNE3O75131 537 aaKnown RBP6.77□□□□□ -1.33
VPS29-205ENST00000548539 PRPF40AO75400 957 aaKnown RBP6.77□□□□□ -1.33
VPS29-205ENST00000548539 GDNFP39905 211 aa6.77□□□□□ -1.33
VPS29-205ENST00000548539 ERVK-24P63145 666 aa6.77□□□□□ -1.33
VPS29-205ENST00000548539 XPCQ01831 940 aaPredicted RBP6.77□□□□□ -1.33
VPS29-205ENST00000548539 KCNA10Q16322 511 aa6.77□□□□□ -1.33
VPS29-205ENST00000548539 ZC3H12AQ5D1E8 599 aaKnown RBP6.77□□□□□ -1.33
VPS29-205ENST00000548539 ATG14Q6ZNE5 492 aa6.77□□□□□ -1.33
VPS29-205ENST00000548539 TRAK1Q9UPV9 953 aa6.77□□□□□ -1.33
VPS29-205ENST00000548539 TCAF2A6NFQ2 919 aa6.76□□□□□ -1.33
VPS29-205ENST00000548539 GADD45BO75293 160 aaPredicted RBP6.76□□□□□ -1.33
VPS29-205ENST00000548539 TSNAXIP1Q2TAA8 658 aa6.76□□□□□ -1.33
VPS29-205ENST00000548539 DCP1AQ9NPI6 582 aaPredicted RBP6.76□□□□□ -1.33
VPS29-205ENST00000548539 TMEM39AQ9NV64 488 aa6.76□□□□□ -1.33
VPS29-205ENST00000548539 GPN3Q9UHW5 284 aaPredicted RBP6.76□□□□□ -1.33
VPS29-205ENST00000548539 RECKO95980 971 aa6.75□□□□□ -1.33
VPS29-205ENST00000548539 PDZD3Q86UT5 571 aa6.75□□□□□ -1.33
VPS29-205ENST00000548539 BCL11AQ9H165 835 aa6.75□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms