RNA–Protein interactions for RNA: ENST00000541108.1

CLIP1-215, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 1,658 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-215ENST00000541108 OSBPL5Q9H0X9 879 aaPredicted RBP20.87■□□□□ 0.93
CLIP1-215ENST00000541108 TAOK2Q9UL54 1235 aa20.87■□□□□ 0.93
CLIP1-215ENST00000541108 SPDYE2BA6NHP3 402 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 SH2B2O14492 632 aaPredicted RBP20.86■□□□□ 0.93
CLIP1-215ENST00000541108 SPDYE6P0CI01 402 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 DLGAP5Q15398 846 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 SGMS1Q86VZ5 419 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 STK11IPQ8N1F8 1099 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 NKX2-3Q8TAU0 364 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 DHX36Q9H2U1 1008 aaKnown RBP20.86■□□□□ 0.93
CLIP1-215ENST00000541108 DDX4Q9NQI0 724 aaKnown RBP20.86■□□□□ 0.93
CLIP1-215ENST00000541108 FOXD4L1Q9NU39 408 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 CHMP5Q9NZZ3 219 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 SAP30BPQ9UHR5 308 aaKnown RBP20.86■□□□□ 0.93
CLIP1-215ENST00000541108 PCDHAC2Q9Y5I4 1007 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 DICER1Q9UPY3 1922 aaKnown RBP20.86■□□□□ 0.93
CLIP1-215ENST00000541108 ERICH2A1L162 156 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 APOBRQ0VD83 1088 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 PICALMQ13492 652 aa20.86■□□□□ 0.93
CLIP1-215ENST00000541108 IFIT3O14879 490 aaKnown RBP20.85■□□□□ 0.93
CLIP1-215ENST00000541108 RANBP6O60518 1105 aaKnown RBP20.85■□□□□ 0.93
CLIP1-215ENST00000541108 PFKFB2O60825 505 aa20.85■□□□□ 0.93
CLIP1-215ENST00000541108 C16orf86Q6ZW13 317 aa20.85■□□□□ 0.93
CLIP1-215ENST00000541108 IQCA1Q86XH1 822 aa20.85■□□□□ 0.93
CLIP1-215ENST00000541108 GTF3C6Q969F1 213 aa20.85■□□□□ 0.93
CLIP1-215ENST00000541108 ENTPD3O75355 529 aa20.84■□□□□ 0.93
CLIP1-215ENST00000541108 PDIA3P30101 505 aaKnown RBP20.84■□□□□ 0.93
CLIP1-215ENST00000541108 ZNF280AP59817 542 aaPredicted RBP20.84■□□□□ 0.93
CLIP1-215ENST00000541108 EVX2Q03828 476 aa20.84■□□□□ 0.93
CLIP1-215ENST00000541108 NFIAQ12857 509 aa20.84■□□□□ 0.93
CLIP1-215ENST00000541108 TMEM67Q5HYA8 995 aa20.84■□□□□ 0.93
CLIP1-215ENST00000541108 CCDC83Q8IWF9 413 aa20.84■□□□□ 0.93
CLIP1-215ENST00000541108 UBAC1Q9BSL1 405 aa20.84■□□□□ 0.93
CLIP1-215ENST00000541108 TDRD3Q9H7E2 651 aaKnown RBP20.84■□□□□ 0.93
CLIP1-215ENST00000541108 MKNK2Q9HBH9 465 aa20.84■□□□□ 0.93
CLIP1-215ENST00000541108 PRDM1O75626 825 aa20.83■□□□□ 0.93
CLIP1-215ENST00000541108 SBF1O95248 1867 aa20.83■□□□□ 0.93
CLIP1-215ENST00000541108 ZBED3Q96IU2 234 aaPredicted RBP20.83■□□□□ 0.93
CLIP1-215ENST00000541108 LY9Q9HBG7 655 aa20.83■□□□□ 0.93
CLIP1-215ENST00000541108 TMOD2Q9NZR1 351 aa20.83■□□□□ 0.93
CLIP1-215ENST00000541108 HLA-DOAP06340 250 aa20.83■□□□□ 0.92
CLIP1-215ENST00000541108 ST3GAL1Q11201 340 aa20.83■□□□□ 0.92
CLIP1-215ENST00000541108 FKBP1CQ5VVH2 108 aa20.83■□□□□ 0.92
CLIP1-215ENST00000541108 ZNF444Q8N0Y2 327 aaPredicted RBP20.83■□□□□ 0.92
CLIP1-215ENST00000541108 NECAB1Q8N987 351 aa20.83■□□□□ 0.92
CLIP1-215ENST00000541108 DYNLL2Q96FJ2 89 aa20.83■□□□□ 0.92
CLIP1-215ENST00000541108 ZSCAN10Q96SZ4 725 aaPredicted RBP20.83■□□□□ 0.92
CLIP1-215ENST00000541108 EHD4Q9H223 541 aa20.83■□□□□ 0.92
CLIP1-215ENST00000541108 GPHNQ9NQX3 736 aaPredicted RBP20.83■□□□□ 0.92
CLIP1-215ENST00000541108 FAM198AQ9UFP1 575 aa20.83■□□□□ 0.92
CLIP1-215ENST00000541108 MYO1BO43795 1136 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 YBX3P16989 372 aaKnown RBP eCLIP20.82■□□□□ 0.92
CLIP1-215ENST00000541108 CDK8P49336 464 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 GABPAQ06546 454 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 WTAPQ15007 396 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 SLC4A8Q2Y0W8 1093 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 CCDC178Q5BJE1 867 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 LLPHQ9BRT6 129 aaKnown RBP20.82■□□□□ 0.92
CLIP1-215ENST00000541108 MYOZ2Q9NPC6 264 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 SWAP70Q9UH65 585 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 SERPINB13Q9UIV8 391 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 BRPF3Q9ULD4 1205 aa20.82■□□□□ 0.92
CLIP1-215ENST00000541108 COL2A1P02458 1487 aaPredicted RBP20.81■□□□□ 0.92
CLIP1-215ENST00000541108 KLF18A0A0U1RQI7 1052 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 TSPY2A6NKD2 308 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 SCRN1Q12765 414 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 STK3Q13188 491 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 SEC23AQ15436 765 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 SPDYE2Q495Y8 402 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 TCP11L1Q9NUJ3 509 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 SMC3Q9UQE7 1217 aa20.81■□□□□ 0.92
CLIP1-215ENST00000541108 DHX16O60231 1041 aaKnown RBP20.8■□□□□ 0.92
CLIP1-215ENST00000541108 PDIA4P13667 645 aaKnown RBP20.8■□□□□ 0.92
CLIP1-215ENST00000541108 RCAN1P53805 252 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 NUCB2P80303 420 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 GPC2Q8N158 579 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 ZKSCAN3Q9BRR0 538 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 PI4KBQ9UBF8 816 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 ZNF70Q9UC06 446 aaPredicted RBP20.8■□□□□ 0.92
CLIP1-215ENST00000541108 TNKSO95271 1327 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 ATRNL1Q5VV63 1379 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 CCDC69A6NI79 296 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 WNT10BO00744 389 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 GMPSP49915 693 aaPredicted RBP20.8■□□□□ 0.92
CLIP1-215ENST00000541108 CACNB3P54284 484 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 TFAP4Q01664 338 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 APOA5Q6Q788 366 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 NFXL1Q6ZNB6 911 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 SLC12A7Q9Y666 1083 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 GJA3Q9Y6H8 435 aa20.8■□□□□ 0.92
CLIP1-215ENST00000541108 RASA1P20936 1047 aa20.79■□□□□ 0.92
CLIP1-215ENST00000541108 TCP10Q12799 353 aa20.79■□□□□ 0.92
CLIP1-215ENST00000541108 SYNE3Q6ZMZ3 975 aa20.79■□□□□ 0.92
CLIP1-215ENST00000541108 FOXP4Q8IVH2 680 aaPredicted RBP20.79■□□□□ 0.92
CLIP1-215ENST00000541108 ENAHQ8N8S7 591 aaPredicted RBP20.79■□□□□ 0.92
CLIP1-215ENST00000541108 CNOT7Q9UIV1 285 aaKnown RBP20.79■□□□□ 0.92
CLIP1-215ENST00000541108 HPS5Q9UPZ3 1129 aa20.79■□□□□ 0.92
CLIP1-215ENST00000541108 ZNF541Q9H0D2 1346 aa20.79■□□□□ 0.92
CLIP1-215ENST00000541108 TSPY3P0CV98 308 aa20.78■□□□□ 0.92
CLIP1-215ENST00000541108 TSPY8P0CW00 308 aa20.78■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms