RNA–Protein interactions for RNA: ENST00000540338.5

CLIP1-213, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 4,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-213ENST00000540338 PNPLA7Q6ZV29 1317 aa12.35□□□□□ -0.43
CLIP1-213ENST00000540338 UFL1O94874 794 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 TOP1P11387 765 aaKnown RBP12.34□□□□□ -0.43
CLIP1-213ENST00000540338 SKILP12757 684 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 TNNT1P13805 278 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 CALML3P27482 149 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 NLRP12P59046 1061 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 SGMS1Q86VZ5 419 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 PARP4Q9UKK3 1724 aaKnown RBP12.34□□□□□ -0.43
CLIP1-213ENST00000540338 JCADQ9P266 1359 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 FDPSP14324 419 aaKnown RBP12.34□□□□□ -0.43
CLIP1-213ENST00000540338 KLHL10Q6JEL2 608 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 GNL3Q9BVP2 549 aaKnown RBP eCLIP12.34□□□□□ -0.43
CLIP1-213ENST00000540338 ATP8A2Q9NTI2 1148 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 UBASH3AP57075 661 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 PYM1Q9BRP8 204 aaKnown RBP12.34□□□□□ -0.43
CLIP1-213ENST00000540338 PPP6R2O75170 966 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 VPS72Q15906 364 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 VGLL2Q8N8G2 317 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 LINC00116Q8NCU8 138 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 CCDC150Q8NCX0 1101 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 MTA3Q9BTC8 594 aa12.34□□□□□ -0.43
CLIP1-213ENST00000540338 FAM47AQ5JRC9 791 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 FAM196AQ6ZSG2 479 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 FBXL16Q8N461 479 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 IFNKQ9P0W0 207 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 VPS54Q9P1Q0 977 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 GGA1Q9UJY5 639 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 CDC27P30260 824 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 PPFIBP1Q86W92 1011 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 CCDC12Q8WUD4 166 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-213ENST00000540338 KIF2AO00139 706 aaPredicted RBP12.33□□□□□ -0.44
CLIP1-213ENST00000540338 TERF1P54274 439 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 EVCP57679 992 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 RBM6P78332 1123 aaKnown RBP12.33□□□□□ -0.44
CLIP1-213ENST00000540338 SPECC1Q5M775 1068 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 IGDCC4Q8TDY8 1250 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 DHX58Q96C10 678 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 LEMD3Q9Y2U8 911 aa12.33□□□□□ -0.44
CLIP1-213ENST00000540338 hCG_1642624A0A1W2PR95 340 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 DYNC1I1O14576 645 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 RRP9O43818 475 aaKnown RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 AFMP43652 599 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 MYL5Q02045 173 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 STIM1Q13586 685 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 AEBP2Q6ZN18 517 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 C17orf53Q8N3J3 647 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 CCDC148Q8NFR7 591 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 FAM84BQ96KN1 310 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 BRIP1Q9BX63 1249 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 RNF26Q9BY78 433 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 FOXP1Q9H334 677 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 TRMT1Q9NXH9 659 aaKnown RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 HPS5Q9UPZ3 1129 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 TFAP4Q01664 338 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 RC3H1Q5TC82 1133 aaKnown RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 CERS3Q8IU89 383 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 CRACR2BQ8N4Y2 399 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 GOLPH3LQ9H4A5 285 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 POLR2DO15514 142 aaKnown RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 RBM5P52756 815 aaKnown RBP eCLIP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 C11orf57Q6ZUT1 292 aaPredicted RBP12.32□□□□□ -0.44
CLIP1-213ENST00000540338 KCPQ6ZWJ8 1503 aa12.32□□□□□ -0.44
CLIP1-213ENST00000540338 MECOMQ03112 1051 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 ZNF174Q15697 407 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 TEX11Q8IYF3 940 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 CDK5RAP3Q96JB5 506 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 CLIC6Q96NY7 704 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 EPB41L4AQ9HCS5 686 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-213ENST00000540338 MMP1P03956 469 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 ZC3H12CQ9C0D7 883 aaKnown RBP12.31□□□□□ -0.44
CLIP1-213ENST00000540338 VAT1LQ9HCJ6 419 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 STK36Q9NRP7 1315 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 CYP2D7A0A087X1C5 515 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 DDAH1O94760 285 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 SMIM5Q71RC9 77 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 HEATR3Q7Z4Q2 680 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 TIGD1Q96MW7 591 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 ARHGEF1Q92888 912 aaKnown RBP12.31□□□□□ -0.44
CLIP1-213ENST00000540338 MRFAP1L1Q96HT8 127 aa12.31□□□□□ -0.44
CLIP1-213ENST00000540338 PCMTD1Q96MG8 357 aaPredicted RBP12.31□□□□□ -0.44
CLIP1-213ENST00000540338 SAP30BPQ9UHR5 308 aaKnown RBP12.31□□□□□ -0.44
CLIP1-213ENST00000540338 AFDNP55196 1824 aaKnown RBP12.3□□□□□ -0.44
CLIP1-213ENST00000540338 UBA7P41226 1012 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 ZSCAN29Q8IWY8 852 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-213ENST00000540338 FMR1NBQ8N0W7 255 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-213ENST00000540338 BCL11BQ9C0K0 894 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-213ENST00000540338 RIC1Q4ADV7 1423 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 XDHP47989 1333 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 KIF18AQ8NI77 898 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 TGFBRAP1Q8WUH2 860 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 MAGEC2Q9UBF1 373 aaPredicted RBP12.3□□□□□ -0.44
CLIP1-213ENST00000540338 CNTNAP4Q9C0A0 1308 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 MPHOSPH10O00566 681 aaKnown RBP12.3□□□□□ -0.44
CLIP1-213ENST00000540338 RCAN1P53805 252 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 TTC38Q5R3I4 469 aa12.3□□□□□ -0.44
CLIP1-213ENST00000540338 ATP2B4P23634 1241 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 MCM7P33993 719 aa12.29□□□□□ -0.44
CLIP1-213ENST00000540338 IKQ13123 557 aaPredicted RBP12.29□□□□□ -0.44
CLIP1-213ENST00000540338 PNOCQ13519 176 aa12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 21.1 ms